This package was removed from CRAN on 2022-04-08. Its history is shown below.

Reason: check issues were not corrected in time

Details below reflect version 1.3.0, its last release before removal.

cgdsr

1.3.0

R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Benjamin Gross19 releasesCRAN page ↗GitHub ↗

Provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC) at <www.cbioportal.org>.

Install

R (source archive)pak (dev)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/cgdsr/cgdsr_1.3.0.tar.gz"
pkgFile <- "cgdsr_1.3.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.3.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("cBioPortal/cgdsr")

Development version from cBioPortal/cgdsr. Installs pak first if it is not already available.

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-cgdsr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.01

not tracked

Coverage

Dependencies · direct

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 100%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on30 autocran1.6K conda_forge28 c2d4u

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.1

Imports (3)

R.oo R.methodsS3 httr

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (2)

Other (2)

Anders Jacobsen

Contributor

Augustin Luna

Contributor · added in 1.3.0

Listed in earlier versions (2)

Anders Jacobsen Skanderup

no longer listed · 1.1.31 to 1.1.33

cBioPortal Questions

no longer listed · 1.2.10

Package Timeline

19 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.2.0 released · 2022-04-22
archivedRemoved from CRAN
2022-04-08
check issues were not corrected in time
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.3.0
2019-06-26 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.2.10
2018-01-18 · diff ↗
1.2.8
2017-12-06 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.2.6
2017-04-11 · diff ↗
R
R 3.3.0 released · 2016-05-03
1.2.5
2015-08-27 · diff ↗
1.2.4
2015-08-25 · diff ↗
1.2.3
2015-08-19 · diff ↗
R
R 3.2.0 released · 2015-04-16

Show 18 earlier events

1.1.33
2015-01-02 · diff ↗
1.1.32
2014-12-19 · diff ↗
1.1.31
2014-12-11 · diff ↗
R
R 3.1.0 released · 2014-04-10
1.1.30
2013-09-16 · diff ↗
1.1.29
2013-08-28 · diff ↗
R
R 3.0.0 released · 2013-04-03
1.1.19
2012-12-21 · diff ↗
1.1.26
2012-10-29 · diff ↗
R
R 2.15.0 released · 2012-03-30
1.1.18
2011-11-28 · diff ↗
R
R 2.14.0 released · 2011-10-31
1.1.13
2011-09-07 · diff ↗
1.1.4
2011-04-20 · diff ↗
R
R 2.13.0 released · 2011-04-13
1.1
2011-03-01 · diff ↗
1.0.14
2010-11-03
R
R 2.12.0 released · 2010-10-15

Package metadata

Total releases: 19
License: LGPL-3 OSI
Minimum R: ≥ 3.1
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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