R Observatory: Metrics for centrifugeR version 0.1.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

centrifugeR

0.1.7Package record

Non-Trivial Balance of Centrifuge Rotors

0packages depend

2.7Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Duy Nghia PhamCRAN page ↗GitHub ↗Website ↗Issues ↗

Find the numbers of test tubes that can be balanced in centrifuge rotors and show various ways to load them. Refer to Pham (2020) doi:10.31224/osf.io/4xs38 for more information on package functionality.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("centrifugeR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("phamdn/centrifugeR")

Development version from phamdn/centrifugeR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-centrifuger

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-centrifugeR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-centrifugeR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Duy Nghia Pham <nghiapham@yandex.com>’

Package CITATION file contains call(s) to old-style citEntry().  Please
use bibentry() instead.

CRAN check page ↗

Slowest check: 1.1 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.7

README· In the repository, left out of the releaseVignettesNoNEWSNoCitation fileYes · software entry onlyWebsiteYes

Help pages: 10includes a package overview page
Examples that run: 100%4 run in a plain check
Exported functions with examples: 44%
Documented parameters: 100%
Return-value docs: 89%
Help pages citing references: 60%

How these are measured

Downloads

2.7K

CRAN downloads in the past year

Rank #15,990 · ~7/day · ~224/mo

Releases R versions

Daily download trend is not available in this view yet.

27030 days

78290 days

2.7K1 year

Compare downloads with other packages →

Also on233 r2u7 autocran

How downloads are counted

Repository

phamdn/centrifuger ↗Account: phamdn

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2024-08-16 · Default branch at 0.1.8, ahead of CRAN 0.1.7 (checked 2026-10-22)

Responsiveness

not measured

How these are measured

PracticesBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/phamdn/centrifuger on 2026-10-22.

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Installing centrifugeR adds 32 packages (19 with compiled code, 27 MB of source tarballs). Heaviest: bslib 5.6 MB, promises 3.1 MB, sass 2.9 MB.

Depends (1)

R >= 4.2.0

Imports (6)

pracma shiny shinythemesgrDevicesgraphicsutils

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Duy Nghia Pham

Author, Maintainer since 0.1.3 (2020)

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.7Latest
record
2022-12-15 · current release · diff ↗ ·
added 1 export
launch
0.1.6
record
2022-06-23 · diff ↗ ·
added 3 exports
p2c, pie2, rotor
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.1.5
record
2020-09-23 · diff ↗ ·
added 1 export
rotorVerify
R
R 4.0.0 released · 2020-04-24
0.1.4
record
2020-04-17 · diff ↗ ·
added 1 export
rotorSpeed
0.1.3
record
2020-01-19
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2020-01-19
Total releases: 5 / 6 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.2.0
Download size: 54 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("centrifugeR")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.31224/osf.io/4xs38.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for centrifugeR version 0.1.7 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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