bsocialv2

0.2.1

Analysis of Microbial Social Behavior in Bacterial Consortia

0packages depend

1.5Kdownloads / year

69.5%test coverage

11/13checks pass

Overview

About

Maintained by Juan Emilio Martinez ManjonFirst published 2026-04-132 releasesCRAN page ↗GitHub ↗

Provides an S4 class and methods for analyzing microbial social behavior in bacterial consortia. Includes growth parameter extraction, social behavior classification (cooperators/cheaters/neutrals), diversity effect analysis, consortium assembly path finding, and stability analysis via coefficient of variation. Methods are described in Purswani et al. (2017) doi:10.3389/fmicb.2017.00919.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("bsocialv2", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Juane99/bsocialv2")

Development version from Juane99/bsocialv2. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bsocialv2

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-bsocialv2

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bsocialv2

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 2.3 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.23

69.5%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-04-14
3 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 113 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

1.5K

CRAN downloads in the past year

Rank #8,272 · ~4/day · ~124/mo

Releases R versions

Daily download trend is not available in this view yet.

30530 days

1.3K90 days

1.5K1 year

Compare downloads with other packages →

Also on33 r2u48 autocran

Repository

GitHub ↗ juane99/bsocialv2

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-04-28

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 1 family in the upstream repository

Checks run against github.com/juane99/bsocialv2 on 2026-07-19.

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (2)

R >= 4.0methods

Imports (11)

dplyr ggplot2grDevicesgrowthcurver igraph magrittr reshape2 rlangstatstidyr viridis

LinkingTo (0)

none

Suggests (4)

readr testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 2,065 (73%)Rd 504 (18%)Vignettes 275 (10%)

Code characteristics

Object systems

S4 class1S4 generic11S4 method11

Cyclomatic complexity: 5.0 median / 6 max
Test cases: 24 / 0.23 per code line

Test coverage

Line coverage

69%

Expression

71.5%

Tests / Examples

69.5% / 0% ex

Functions

2 0 exported

Complexity

5 avg / 6 max

Call network

2 nodes / 0 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

2 functions

Function	Cyclo	Coverage
bsocial_log	4	63%
generate_social_plot	6	77%

People & History

People (4)

Maintainer (1)

Juan Emilio Martinez Manjon

Author, Maintainer

Authors (4)

Juan Emilio Martinez Manjon

Author, Maintainer

Maria Garcia Toledo

Author

Jessica Purswani

Author

Rocio Romero Zaliz

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

0.2.1Latest
2026-04-28 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
0.1.1
2026-04-13
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-04-13
Total releases: 2 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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