R Observatory: Metrics for bmotif version 2.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-12-05. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 2.0.2, its last release before removal.

bmotif

2.0.2

Motif Analyses of Bipartite Networks

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Benno Simmons4 releasesCRAN page ↗

Counts occurrences of motifs in bipartite networks, as well as the number of times each node or link appears in each unique position within motifs. Has support for both binary and weighted motifs: can calculate the mean weight of motifs and the standard deviation of their mean weights. Intended for use in ecology, but its methods are general and can be applied to any bipartite network. Full details are given in Simmons et al. (2019) doi:10.1111/2041-210X.13149.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/bmotif/bmotif_2.0.2.tar.gz"
pkgFile <- "bmotif_2.0.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.0.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bmotif

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bmotif

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.59

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Documentation

READMEYes · 1,065 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 100%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on322 r2u18 autocran

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (5)

tensor Rcpp reshape2 gtoolsstats

LinkingTo (1)

Rcpp

Suggests (3)

testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (4)

Maintainer (1)

Benno Simmons

Author, Maintainer

Authors (4)

Benno Simmons

Author, Maintainer

Michelle Sweering

Author

Maybritt Schillinger

Author · added in 2.0.0

Riccardo Di Clemente

Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-12-05
issues were not corrected despite reminders
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
2.0.2
2020-09-11 · diff ↗
unarchivedReturned to CRAN
2020-09-11
archivedRemoved from CRAN
2020-07-23
check problems were not corrected in time
2.0.1
2020-07-02 · diff ↗
R
R 4.0.0 released · 2020-04-24
2.0.0
2019-12-11 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
1.0.0
2018-01-29
R
R 3.4.0 released · 2017-04-21

Package metadata

Total releases: 4
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("bmotif")

Format

Simmons, B., Sweering, M., Schillinger, M., & Di Clemente, R. (n.d.). bmotif: Motif Analyses of Bipartite Networks (Version 2.0.2) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=bmotif

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for bmotif version 2.0.2 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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