This package was removed from CRAN on 2023-07-07. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.1.1, its last release before removal.

biosurvey

0.1.1

Tools for Biological Survey Planning

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Claudia Nuñez-Penichet2 releasesCRAN page ↗GitHub ↗

A collection of tools that allows users to plan systems of sampling sites, increasing the efficiency of biodiversity monitoring by considering the relationship between environmental and geographic conditions in a region. The options for selecting sampling sites included here differ from other implementations in that they consider the environmental and geographic conditions of a region to suggest sampling sites that could increase the efficiency of efforts dedicated to monitoring biodiversity. The methods proposed here are new in the sense that they combine various criteria and points previously made in related literature; some of the theoretical and methodological bases considered are described in: Arita et al. (2011) doi:10.1111/j.1466-8238.2011.00662.x, Soberón and Cavner (2015) doi:10.17161/bi.v10i0.4801, and Soberón et al. (2021).

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/biosurvey/biosurvey_0.1.1.tar.gz"
pkgFile <- "biosurvey_0.1.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("claununez/biosurvey")

Development version from claununez/biosurvey. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-biosurvey

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-biosurvey

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.12

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Documentation

READMEYes · 1,501 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 96%
Documented parameters: 99%
Return-value docs: 100%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on121 r2u38 autocran

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.6.0

Imports (18)

diptest doParallel foreachgraphicsgrDevicesks mapsmethodsparallelpicante raster rgdal rgeos sp spatstat.geomstatsutilsvegan

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

R 9,198 (66%)Rd 3,515 (25%)Vignettes 1,188 (9%)

Code characteristics

Object systems

S310

Cyclomatic complexity: 9.0 median / 39 max
Test cases: 61 / 0.12 per code line

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

66 54 exported

Complexity

10.9 avg / 39 max

Call network

66 nodes / 60 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 3

Name	Class	Rows × Cols	Also ships in
preselected	data.frame	5 × 3	–
sp_data	data.frame	590 × 2	–
sp_occurrences	data.frame	19 × 3	–

People & History

People (8)

Maintainer (1)

Claudia Nuñez-Penichet

Author, Maintainer

Authors (8)

Claudia Nuñez-Penichet

Author, Maintainer

Author

Author

Author

Author

Author

Adolfo G. Navarro-Sigüenza

Author

A. Townsend Peterson

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2023-07-07
issues were not corrected in time
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.1.1
2021-09-15 · diff ↗
0.1.0
2021-09-14
R
R 4.1.0 released · 2021-05-18

Package metadata

Total releases: 2
License: GPL-3 OSI
Minimum R: ≥ 3.6.0
Bundled data: 1.2 MB / 10 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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