R Observatory: Metrics for bioset version 0.2.3

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-04-27. Its history is shown below.

Reason: check issues were not corrected in time. length > 1 in && or ||

Details below reflect version 0.2.3, its last release before removal.

bioset

0.2.3

Convert a Matrix of Raw Values into Nice and Tidy Data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Eike Christian Kühn5 releasesCRAN page ↗GitHub ↗

Functions to help dealing with raw data from measurements, like reading and transforming raw values organized in matrices, calculating and converting concentrations and calculating precision of duplicates / triplicates / ... . It is compatible with and building on top of some 'tidyverse'-packages.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/bioset/bioset_0.2.3.tar.gz"
pkgFile <- "bioset_0.2.3.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.2.3) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("randomchars42/bioset")

Development version from randomchars42/bioset. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bioset

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bioset

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.13

not tracked

Coverage

100%

Documentation · exports

9

Dependencies · direct

Documentation

READMEYes · 3,582 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on18 r2u15 autocran1.4K conda_forge

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (9)

utilsstatsgraphicsgrDevicestidyr dplyr (>= 0.7.4)rlang tibble magrittr

LinkingTo (0)

none

Suggests (4)

ggplot2 testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Eike Christian Kühn

Author, Maintainer

Authors (1)

Eike Christian Kühn

Author, Maintainer

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-04-27
check issues were not corrected in time length > 1 in && or ||
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.2.3
2018-11-13 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.2.2
2018-04-17 · diff ↗
0.2.1
2018-04-04 · diff ↗
0.2.0
2017-11-03 · diff ↗
0.1.0
2017-10-08
R
R 3.4.0 released · 2017-04-21

Package metadata

Total releases: 5
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.4.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("bioset")

Format

Kühn, E. C. (n.d.). bioset: Convert a Matrix of Raw Values into Nice and Tidy Data (Version 0.2.3) [Computer software]. Retrieved August 13, 2026, from https://CRAN.R-project.org/package=bioset

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for bioset version 0.2.3 [Data set]. HJJB, LLC. Data release v2026-08-11. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-11, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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