R Observatory: Metrics for bionetdata version 1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

bionetdata

1.1Package record

Biological and Chemical Data Networks

0packages dependsuggested by 2

3.5Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Giorgio ValentiniCRAN page ↗

Data Package that includes several examples of chemical and biological data networks, i.e. data graph structured.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("bionetdata", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bionetdata

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-bionetdata

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bionetdata

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTECRAN incoming feasibilityr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Maintainer: ‘Giorgio Valentini<valentini@di.unimi.it>’

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: c(person(given = "Giorgio",
                      family = "Valentini",
                      role = c("aut", "cre"),
                      email = "valentini@di.unimi.it"),
               person(given = c("Matteo", "Re", "--", "Universita'", "degli", "Studi", "di"),
                      family = "Milano",
                      role = "aut"))
as necessary.

CRAN check page ↗

Slowest check: 58 s · r-devel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-09-08
ERROR10 OK, 2 NOTE, 1 ERROR2026-09-07
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 9includes a package overview page
Examples that run: 100%8 run in a plain check
Exported functions with examples: not tracked
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 89%

How these are measured

Downloads

3.5K

CRAN downloads in the past year

Rank #12,326 · ~10/day · ~296/mo

Releases R versions

Daily download trend is not available in this view yet.

32530 days

89690 days

3.5K1 year

Compare downloads with other packages →

Also on1.6K r2u25 autocran

How downloads are counted

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Installing bionetdata adds no packages beyond those that come with R.

Depends (1)

R >= 2.10

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 2

Suggests, most downloaded first

RANKS NetPreProc

How these are counted

Code & Tests

Datasets

People & History

People (from the free-text Author field) (2)

Giorgio Valentini

· added in 1.1

Matteo Re -- Universita' degli Studi di Milano

· added in 1.1

Maintainer since 1.1 (2022), previously Matteo Re (1.0 to 1.0.1)

Listed in earlier versions (2)

Giorgio Valentini -- Universita' degli Studi di Milano

no longer listed · 1.0 to 1.0.1

Matteo Re

no longer listed · 1.0 to 1.0.1

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
unarchivedReturned to CRAN
2022-09-12
1.1Latest
record
2022-09-12 · current release · diff ↗
archivedRemoved from CRAN
2022-05-23
check issues were not corrected despite reminders
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
1.0.1
record
2014-09-07 · diff ↗

Show 5 earlier eventsHide 5 earlier events

R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
1.0
record
2012-02-20
R
R 2.14.0 released · 2011-10-31

Package metadata

First published: 2012-02-20
Total releases: 3 / 14 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 3.0 MB / 9 files
Download size: 3.1 MB

Appears in task views

Network Analysis

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("bionetdata")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for bionetdata version 1.1 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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