R Observatory: Metrics for bionetdata version 1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

bionetdata

1.1

Biological and Chemical Data Networks

2packages depend

3.4Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Giorgio ValentiniFirst published 2012-02-203 releasesCRAN page ↗

Data Package that includes several examples of chemical and biological data networks, i.e. data graph structured.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("bionetdata", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bionetdata

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-bionetdata

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bionetdata

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 59 s · r-devel-windows-x86_64

Code health

None

Tests

not tracked

Coverage

0

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 89%

Downloads

3.4K

CRAN downloads in the past year

Rank #13,046 · ~9/day · ~286/mo

Releases R versions

Daily download trend is not available in this view yet.

20730 days

79090 days

3.4K1 year

Compare downloads with other packages →

Also on1.6K r2u62 autocran

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

NetPreProc RANKS

Code & Tests

Datasets

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (4)

Giorgio Valentini -- Universita' degli Studi di Milano

no longer listed · 1.0 to 1.0.1

Matteo Re

no longer listed · 1.0 to 1.0.1

Matteo Re -- Universita' degli Studi di Milano

no longer listed · 1.1

Giorgio Valentini

no longer listed · 1.1

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1Latest
2022-09-12 · current release · diff ↗
unarchivedReturned to CRAN
2022-09-12
archivedRemoved from CRAN
2022-05-23
check issues were not corrected despite reminders
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
1.0.1
2014-09-07 · diff ↗

Show 5 earlier events

R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
1.0
2012-02-20
R
R 2.14.0 released · 2011-10-31

Package metadata

First published: 2012-02-20
Total releases: 3 / 14 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 3.0 MB / 9 files
Download size: 3.1 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Network Analysis

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("bionetdata")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for bionetdata version 1.1 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →