R Observatory: Metrics for biclust version 2.0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2025-12-19. Its history is shown below.

Reason: issues were not corrected despite reminders

Details below reflect version 2.0.3.1, its last release before removal.

biclust

2.0.3.1Package record

BiCluster Algorithms

0packages dependsuggested by 1

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Sebastian KaiserCRAN page ↗

The main function biclust() provides several algorithms to find biclusters in two-dimensional data: Cheng and Church (2000, ISBN:1-57735-115-0), spectral (2003) doi:10.1101/gr.648603, plaid model (2005) doi:10.1016/j.csda.2004.02.003, xmotifs (2003) doi:10.1142/9789812776303_0008 and bimax (2006) doi:10.1093/bioinformatics/btl060. In addition, the package provides methods for data preprocessing (normalization and discretisation), visualisation, and validation of bicluster solutions.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/biclust/biclust_2.0.3.1.tar.gz"
pkgFile <- "biclust_2.0.3.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.0.3.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.0.3.1

READMENoVignettesNoNEWSYes · 67% structuredCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 37
Examples that run: 79%23 run in a plain check · 6 never run
Exported functions with examples: 88%
Documented parameters: 100%
Return-value docs: 88%
Help pages citing references: 59%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on440 r2u330 autocran3.8K conda_forge2 bioconda151 c2d4u

How downloads are counted

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (5)

R >= 2.10MASSgridcolorspacelattice

Imports (5)

methodsflexclust additivityTests tidyr ggplot2

LinkingTo (0)

none

Suggests (1)

isa2

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Suggested by 1

Suggests, most downloaded first

isa2

How these are counted

Code & Tests

Datasets

People & History

People (9)

Sebastian Kaiser

Contributor

Rodrigo Santamaria

Contributor

Tatsiana Khamiakova

Contributor · added in 1.1.0

Martin Sill

Contributor · added in 0.9.1

Roberto Theron

Contributor

Luis Quintales

Contributor

Friedrich Leisch

Contributor · added in 1.1.0

Ewoud De Troyer

Contributor · added in 2.0.3

Show 1 more personHide 1 person

Sami Leon.

Contributor · added in 2.0.3

Maintainer since 0.5 (2007)

Listed in earlier versions (4)

Show 4 peopleHide 4 people

Friedrich Leisch.

no longer listed · 0.5 to 1.0.2

Khamiakova

no longer listed · 1.0 to 1.0.2

Tatsiana

no longer listed · 1.0 to 1.0.2

Ewoud De Troyer.

no longer listed · 1.1.0 to 2.0.2

Releases (15)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-12-19
issues were not corrected despite reminders
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.0.3.1
record
2023-05-19 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
2.0.3
record
2021-05-25 · diff ↗ ·
added 1 export
spectral
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
unarchivedReturned to CRAN
2020-02-04
2.0.2
record
2020-02-04 · diff ↗
R
R 3.6.0 released · 2019-04-26
orphanedOrphaned by its maintainer
2018-06-09
check errors were ignored despite reminders Use of uninitialized memory, major leaks detected by valgrind 'fflush(stdin)' is undefined behaviour (or pointless in POSIX 2008)
2.0.1
record
2018-06-09 · diff ↗
2.0.0
record
2018-05-18 · diff ↗ ·
added 2 exports
diagnosticPlot2, diagnosticTest

Show 26 earlier eventsHide 26 earlier events

R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.2.0
record
2015-05-08 · diff ↗
R
R 3.2.0 released · 2015-04-16
1.1.0
record
2015-03-19 · diff ↗
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
1.0.2
record
2011-03-15 · diff ↗
1.0.1
record
2011-03-15 · diff ↗
1.0
record
2011-03-01 · diff ↗ ·
added 13 exports
isoverlapp, ensemble, jaccard2, plaid.grid, bimax.grid, bicluster, biclusternumber, ChiaKaruturi, computeObservedFstat, diagnoseColRow, diagnosticPlot, biclustbarchart, heatmapBC
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
0.9.1
record
2009-12-04 · diff ↗ ·
added 5 exports
BCrepBimax, BCQuestord, BCQuestmet, bicorder, predictBimax
R
R 2.10.0 released · 2009-10-26
0.8.1
record
2009-05-04 · diff ↗
0.7.2
record
2009-04-23 · diff ↗
R
R 2.9.0 released · 2009-04-17
0.7.1
record
2009-03-13 · diff ↗ ·
added 6 exports
drawHeatmap2, BCQuest, clustmember, biclustmember, plotclust, writeclust
R
R 2.8.0 released · 2008-10-20
R
R 2.7.0 released · 2008-04-22
0.5
record
2007-11-29
R
R 2.6.0 released · 2007-10-03

Package metadata

First published: 2007-11-29
Total releases: 15 / 19 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 794 KB / 4 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("biclust")

Format

Kaiser, S., Santamaria, R., Khamiakova, T., Sill, M., Theron, R., Quintales, L., Leisch, F., Troyer, E. D., & Leon., S. (n.d.). biclust: BiCluster Algorithms (Version 2.0.3.1) [Computer software]. Retrieved October 26, 2026, from https://CRAN.R-project.org/package=biclust

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for biclust version 2.0.3.1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →