R Observatory: Metrics for beaver version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

beaver

1.0.0

Bayesian Model Averaging of Covariate Adjusted Negative-Binomial Dose-Response

0packages depend

2.7Kdownloads / year

93.3%test coverage

13/13checks pass

Overview

About

Maintained by Hollins ShowalterFirst published 2024-05-221 releasesCRAN page ↗GitHub ↗

Dose-response modeling for negative-binomial distributed data with a variety of dose-response models. Covariate adjustment and Bayesian model averaging is supported. Functions are provided to easily obtain inference on the dose-response relationship and plot the dose-response curve.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("beaver", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rich-payne/beaver")

Development version from rich-payne/beaver. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-beaver

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-beaver

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-beaver

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 10.8 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 5.85

93.3%

Coverage · measured lines

100%

Documentation · exports

12

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 142 wordsVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 48%
Return-value docs: 93%
References docs: 0%

Downloads

2.7K

CRAN downloads in the past year

Rank #16,470 · ~8/day · ~229/mo

Releases R versions

Daily download trend is not available in this view yet.

17330 days

64490 days

2.7K1 year

Compare downloads with other packages →

Also on153 r2u25 autocran

Repository

GitHub ↗ rich-payne/beaver

1Stars

1Forks

0Open issues

0Open PRs

1Releases

4Commits

2Contributors

4 commits · Last activity 2024-05-23

Stars over time

2024-12-14 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/rich-payne/beaver on 2026-08-16.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Lint, format, editor (2)

lintrRStudio project

Show all practices

Coverage (1)

.covrignore

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

13 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (12)

checkmate dplyr ellipsis fs (>= 1.5)ggplot2 purrr rjags rlang stringr tibble tidyr yodel

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Hollins Showalter

Author, Maintainer

Authors (2)

Hollins Showalter

Author, Maintainer

Richard Payne

Author

Copyright holders (1)

Eli Lilly and Company

Copyright holder

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2024-05-22
Total releases: 1 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: 564 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("beaver")

Format

Showalter, H., Eli Lilly and Company, , & Payne, R. (2024). beaver: Bayesian Model Averaging of Covariate Adjusted Negative-Binomial Dose-Response (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.beaver

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for beaver version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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