R Observatory: Metrics for beadarrayMSV version 1.1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2020-06-16. Its history is shown below.

Reason: required package 'rggobi' which is increasingly hard to install

Details below reflect version 1.1.0, its last release before removal.

beadarrayMSV

1.1.0

Analysis of Illumina BeadArray SNP data including MSV markers

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Lars Gidskehaug5 releasesCRAN page ↗

Imports bead-summary data from Illumina scanner. Pre-processes using a suite of optional normalizations and transformations. Clusters and automatically calls genotypes, critically able to handle markers in duplicated regions of the genome (multisite variants; MSVs). Interactive clustering if needed. MSVs with variation in both paralogs may be resolved and mapped to their respective chromosomes. Quality control including pedigree checking and visual assessment of clusters. Too large data-sets are handled by working on smaller subsets of the data in sequence.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/beadarrayMSV/beadarrayMSV_1.1.0.tar.gz"
pkgFile <- "beadarrayMSV_1.1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

5

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 35%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 21%

Downloads

beadarrayMSV Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (4)

R >= 2.10.0Biobasemethodsgeneplotter

Imports (2)

rggobi limma

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Other (1)

Lars Gidskehaug

Contributor

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2020-06-16
required package 'rggobi' which is increasingly hard to install
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
1.1.0
2011-02-20 · diff ↗
1.0.4.1
2010-12-13 · diff ↗
1.0.4
2010-12-13 · diff ↗

Show 4 earlier events

1.0.3
2010-12-13 · diff ↗
R
R 2.12.0 released · 2010-10-15
1.0.2
2010-08-31
R
R 2.11.0 released · 2010-04-22

Package metadata

Total releases: 5
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10.0
Bundled data: 6.6 MB / 2 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("beadarrayMSV")

Format

Gidskehaug, L. (n.d.). beadarrayMSV: Analysis of Illumina BeadArray SNP data including MSV markers (Version 1.1.0) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=beadarrayMSV

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for beadarrayMSV version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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