This package was removed from CRAN on 2025-04-01. Its history is shown below.

Reason: email to the maintainer is undeliverable

Details below reflect version 0.99.3, its last release before removal.

bayesCT

0.99.3

Simulation and Analysis of Adaptive Bayesian Clinical Trials

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Thevaa Chandereng4 releasesCRAN page ↗GitHub ↗

Simulation and analysis of Bayesian adaptive clinical trials for binomial, Gaussian, and time-to-event data types, incorporates historical data and allows early stopping for futility or early success. The package uses novel and efficient Monte Carlo methods for estimating Bayesian posterior probabilities, evaluation of loss to follow up, and imputation of incomplete data. The package has the functionality for dynamically incorporating historical data into the analysis via the power prior or non-informative priors.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/bayesCT/bayesCT_0.99.3.tar.gz"
pkgFile <- "bayesCT_0.99.3.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.99.3) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("thevaachandereng/bayesCT")

Development version from thevaachandereng/bayesCT. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bayesct

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-bayesCT

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.06

not tracked

Coverage

97%

Documentation · exports

Dependencies · direct

Documentation

READMEYes · 207 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on142 r2u13 autocran33 c2d4u

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (5)

bayesDP dplyr purrrsurvivalmagrittr

LinkingTo (0)

none

Suggests (5)

testthat rmarkdown pkgdown devtools knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (6)

Maintainer (1)

Thevaa Chandereng

Author, Maintainer, Copyright holder

Authors (6)

Thevaa Chandereng

Author, Maintainer, Copyright holder

Donald Musgrove

Author, Copyright holder

Tarek Haddad

Author, Copyright holder

Graeme Hickey

Author, Copyright holder

Timothy Hanson

Author, Copyright holder

Theodore Lystig

Author, Copyright holder

Thevaa Chandereng

Author, Maintainer, Copyright holder

Donald Musgrove

Author, Copyright holder

Tarek Haddad

Author, Copyright holder

Graeme Hickey

Author, Copyright holder

Timothy Hanson

Author, Copyright holder

Theodore Lystig

Author, Copyright holder

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2025-04-01
email to the maintainer is undeliverable
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.99.3
2020-07-01 · diff ↗
unarchivedReturned to CRAN
2020-07-01
archivedRemoved from CRAN
2020-05-12
check problems were not corrected in time
R
R 4.0.0 released · 2020-04-24
archivedRemoved from CRAN
2020-02-24
depends on archived package 'bayesDP'
0.99.2
2020-02-09 · diff ↗
unarchivedReturned to CRAN
2020-02-09
R
R 3.6.0 released · 2019-04-26
0.99.1
2019-03-13 · diff ↗
0.99.0
2019-01-30

Show 1 earlier events

R
R 3.5.0 released · 2018-04-23

Package metadata

Total releases: 4
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 8.0 KB / 3 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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