R Observatory: Metrics for baskoptr version 1.0.4

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

baskoptr

1.0.4Package record

Utility-Based Optimization for Basket Trial Designs

0packages depend

1.4Kdownloads / year

98.7%test coverage

11/13flavors OK

Overview

About

Maintained by Lukas D SauerCRAN page ↗GitHub ↗Issues ↗

A unified framework for optimizing basket trial designs. To this end, the package supplies several utility functions and also a function for executing optimization algorithms on basket trial designs. The considered utility functions are discussed in Sauer et al. (2025) doi:10.1371/journal.pone.0323097.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("baskoptr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("LukasDSauer/baskoptr")

Development version from LukasDSauer/baskoptr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-baskoptr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-baskoptr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-baskoptr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Rd files without \usage:
  ‘params_main.Rd’ ‘params_utility_caller.Rd’
\arguments should not be documented without \usage.

CRAN check page ↗

Slowest check: 13.0 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTE2026-09-08
ERROR10 OK, 2 NOTE, 1 ERROR2026-09-07
NOTE12 OK, 1 NOTE2026-07-11
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08

Show 1 earlier changeHide 1 earlier change

OK3 OK2026-04-03

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.4

READMEYes · 103 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 14
Examples that run: 100%8 run in a plain check
Exported functions with examples: 100%
Documented parameters: 94%
Return-value docs: 100%
Help pages citing references: 29%

How these are measured

Downloads

1.4K

CRAN downloads in the past year

Rank #21,200 · ~4/day · ~118/mo

Releases R versions

Daily download trend is not available in this view yet.

24530 days

62290 days

1.4K1 year

Compare downloads with other packages →

Also on48 r2u19 autocran

How downloads are counted

Repository

lukasdsauer/baskoptr ↗Account: LukasDSauer

0Stars

0Forks

1Open issues

0Open PRs

1Releases

100Commits

2Commit identities

basket-trialsclinical-trialsoptimizationutility-functions

100 commits · Last activity 2026-04-07

Responsiveness

not measured

Releases over time

2026-03-20 · 12026-07-07 · 1

How these are measured

PracticesBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/lukasdsauer/baskoptr on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (1)

README.Rmd

Coverage (1)

Coverage reporting (Codecov)

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing baskoptr adds 45 packages (20 with compiled code, 21 MB of source tarballs). Heaviest: ggplot2 6.0 MB, Rcpp 1.8 MB, isoband 1.5 MB.

Depends (1)

R >= 3.5.0

Imports (2)

baskwrap future.apply

LinkingTo (0)

none

Suggests (5)

optimizr baskexact testthat (>= 3.0.0)progressr basksim

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Lukas D Sauer

Author, Maintainer since 1.0.4 (2026)

Releases (1)

R
R 4.6.0 released · 2026-04-24
1.0.4Latest
record
2026-04-02 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-04-02
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Download size: 130 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("baskoptr")

Format

Sauer, L. D. (2026). baskoptr: Utility-Based Optimization for Basket Trial Designs (Version 1.0.4) [Computer software]. https://doi.org/10.32614/CRAN.package.baskoptr

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for baskoptr version 1.0.4 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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