R Observatory: Metrics for apmx version 1.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

apmx

1.1.1

Automated Population Pharmacokinetic Dataset Assembly

0packages depend

2.7Kdownloads / year

77.1%test coverage

13/13checks pass

Overview

About

Maintained by Stephen AmoriFirst published 2024-01-091 releasesCRAN page ↗GitHub ↗

Automated methods to assemble population PK (pharmacokinetic) and PKPD (pharmacodynamic) datasets for analysis in 'NONMEM' (non-linear mixed effects modeling) by Bauer (2019) doi:10.1002/psp4.12404. The package includes functions to build datasets from SDTM (study data tabulation module) https://www.cdisc.org/standards/foundational/sdtm, ADaM (analysis dataset module) https://www.cdisc.org/standards/foundational/adam, or other dataset formats. The package will combine population datasets, add covariates, and create documentation to support regulatory submission and internal communication.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("apmx", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("stephen-amori/apmx")

Development version from stephen-amori/apmx. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-apmx

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-apmx

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-apmx

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.2 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 1.03

77.1%

Coverage · measured lines

100%

Documentation · exports

9

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 1,729 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.7K

CRAN downloads in the past year

Rank #15,088 · ~7/day · ~224/mo

Releases R versions

Daily download trend is not available in this view yet.

20630 days

68890 days

2.7K1 year

Compare downloads with other packages →

Also on114 r2u53 autocran

Repository

GitHub ↗ stephen-amori/apmx

7Stars

0Forks

0Open issues

0Open PRs

0Releases

53Commits

4Contributors

License GPL-3.0 · 53 commits · Last activity 2025-04-11 · 0% stars, 30d

Stars over time

2025-06-09 · 62026-07-07 · 7

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/stephen-amori/apmx on 2026-08-16.

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.00

Imports (9)

dplyr tidyr purrr this.path flextable officer tidyselectutilsarsenal

LinkingTo (0)

none

Suggests (4)

rmarkdown knitr testthat tibble

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (5)

Maintainer (1)

Stephen Amori

Author, Maintainer, Copyright holder

Authors (3)

Stephen Amori

Author, Maintainer, Copyright holder

Ethan DellaMaestra

Author

Michael Dick

Author

Contributors (2)

Daniel Litow

Contributor

Jonah Lyon

Contributor

Copyright holders (1)

Stephen Amori

Author, Maintainer, Copyright holder

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.1.1Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2024-01-09
Total releases: 1 / 2 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.00
Bundled data: 17 KB / 5 files
Download size: 210 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("apmx")

Format

Amori, S., DellaMaestra, E., Dick, M., Litow, D., & Lyon, J. (2024). apmx: Automated Population Pharmacokinetic Dataset Assembly (Version 1.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.apmx

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for apmx version 1.1.1 [Data set]. HJJB, LLC. Data release v2026-08-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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