R Observatory: Metrics for apmsWAPP version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2020-10-11. Its history is shown below.

Reason: check problems were not corrected in time

Details below reflect version 1.0, its last release before removal.

apmsWAPP

1.0Package record

Pre- and Postprocessing for AP-MS data analysis based on spectral counts

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Martina FischerCRAN page ↗

apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts. It comprises pre-processing, scoring and postprocessing of protein interactions. A final list of interaction candidates is reported: it provides a ranking of the candidates according to their p-values which allow estimating the number of false-positive interactions.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/apmsWAPP/apmsWAPP_1.0.tar.gz"
pkgFile <- "apmsWAPP_1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 7 (1 internal)includes a package overview page
Examples that run: 100%5 run in a plain check
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 71%

How these are measured

Downloads

apmsWAPP Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0.1

Imports (8)

genefilter Biobase seqinr multtest gtools edgeR DESeq aroma.light

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Martina Fischer

Contributor

Maintainer since 1.0 (2013)

Releases (1)

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2020-10-11
check problems were not corrected in time
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
1.0
record
2013-03-14
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2013-03-14
Total releases: 1 / 13 yrs
License: LGPL-3 OSI

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("apmsWAPP")

Format

Fischer, M. (n.d.). apmsWAPP: Pre- and Postprocessing for AP-MS data analysis based on spectral counts (Version 1.0) [Computer software]. Retrieved October 27, 2026, from https://CRAN.R-project.org/package=apmsWAPP

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for apmsWAPP version 1.0 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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