R Observatory: Metrics for aop version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2019-01-23. Its history is shown below.

Reason: check issues were not corrected in time

Details below reflect version 1.0.0, its last release before removal.

aop

1.0.0Package record

Adverse Outcome Pathway Analysis

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Lyle D. BurgoonCRAN page ↗

Provides tools for analyzing adverse outcome pathways (AOPs) for pharmacological and toxicological research. Functionality includes the ability to perform causal network analysis of networks developed in and exported from Cytoscape or existing as R graph objects, and identifying the point of departure/screening/risk value from concentration- response data.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/aop/aop_1.0.0.tar.gz"
pkgFile <- "aop_1.0.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMEYes · 117 wordsVignettesYes · 2 · dynamicNEWSYes · 0% structuredCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 16
Examples that run: 100%11 run in a plain check
Exported functions with examples: 85%
Documented parameters: 100%
Return-value docs: 69%
Help pages citing references: 0%

How these are measured

Downloads

aop Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

How downloads are counted

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (8)

graph rjson igraph Rgraphvizmethodsplyr ggplot2 (>= 1.0.1)splines

LinkingTo (0)

none

Suggests (4)

RUnit knitr rmarkdown BiocGenerics

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Lyle D. Burgoon

Contributor

Maintainer since 0.99.5 (2015)

Releases (2)

Pick two releases to compare their code metrics.

R
R 3.6.0 released · 2019-04-26
archivedRemoved from CRAN
2019-01-23
check issues were not corrected in time
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0.0
record
2016-03-31 · diff ↗ ·
added 9 exports
bootstrap_metaregression, calculate_confidence_and_median, internal_model_fits, plot_metaregression_confidence_envelope, plot_metaregression_spaghetti_plot, plot_slope_analysis, pod_envelope_analysis, pod_slope_analysis, slope_pod_analysis
0.99.5
record
2015-06-16
R
R 3.2.0 released · 2015-04-16

Package metadata

First published: 2015-06-16
Total releases: 2 / 11 yrs
License: CC0
Bundled data: 1.4 KB / 1 file

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("aop")

Format

Burgoon, L. D. (n.d.). aop: Adverse Outcome Pathway Analysis (Version 1.0.0) [Computer software]. Retrieved October 26, 2026, from https://CRAN.R-project.org/package=aop

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for aop version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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