R Observatory: Metrics for amregtest version 1.3.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

amregtest

1.3.2Package record

Runs Allelematch Regression Tests

0packages depend

3.2Kdownloads / year

0.0%test coverage

13/13flavors OK

Overview

About

Maintained by Torvald StaxlerCRAN page ↗GitHub ↗Issues ↗

Automates regression testing of package 'allelematch'. Over 2500 tests cover all functions in 'allelematch', reproduce the examples from the documentation, and include negative tests. The implementation is based on 'testthat'.

Changes in 1.3.2

New features

Fixed the documentation of 'artInstallCranAllelematch' by preventing the example code in the documentation from executing. The examples took too long to execute in the CRAN tests.
Ensured that the allelematch version installed by 'artInstallCranAllelematch' is also loaded into the current R session of the RStudio Console.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("amregtest", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("torstax/amregtest")

Development version from torstax/amregtest. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-amregtest

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-amregtest

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-amregtest

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 14.2 min · r-oldrel-macos-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-13
ERROR10 OK, 3 ERROR2026-07-25
OK13 OK2026-07-19

Show 3 earlier changesHide 3 earlier changes

ERROR10 OK, 3 ERROR2026-07-06
OK13 OK2026-06-29
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.3.2

READMEYes · 304 wordsVignettesNoNEWSYes · 100% structured · mentions 1.3.2Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 13 (2 internal)includes a package overview page
Examples that run: 75%3 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 75%
Help pages citing references: 62%

How these are measured

Downloads

3.2K

CRAN downloads in the past year

Rank #7,620 · ~9/day · ~270/mo

Releases R versions

Daily download trend is not available in this view yet.

36430 days

1.2K90 days

3.2K1 year

Compare downloads with other packages →

Also on111 r2u30 autocran

How downloads are counted

Repository

torstax/amregtest ↗Account: torstax

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-08-12 · Default branch at 2.0.0.1001, ahead of CRAN 1.3.2 (checked 2026-10-18)

Responsiveness

not measured

How these are measured

PracticesBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/torstax/amregtest on 2026-10-18.

Continuous integration (1)

GitHub Actions

Docs source (1)

README.Rmd

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Installing amregtest adds 26 packages (12 with compiled code, 7.0 MB of source tarballs). Heaviest: fs 1.4 MB, jsonlite 1.0 MB, testthat 814 KB.

Depends (1)

R >= 3.5

Imports (6)

digest R6 remotes testthatutilswithr

LinkingTo (0)

none

Suggests (2)

allelematch rstudioapi

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Torvald Staxler

Author, Maintainer since 1.0.3 (2024)

Paul Galpern

Contributor

Author of the excellent package 'allelematch' from which the five amExample data files have been copied under MIT…

Department of Wildlife, Fish and Environmental Studies at Swedish University of Agricultural Sciences

Copyright holder

Göran Spong

Copyright holder

Senior Lecturer at the Department of Wildlife, Fish and Environmental Studies

Releases (6)

Pick two releases to compare their code metrics.

1.3.2Latest
record
2026-08-04 · current release · diff ↗ ·
added 1 export
artInstallCranAllelematch
1.2.0
record
2026-07-13 · diff ↗
1.1.0
record
2026-07-04 · diff ↗
1.0.10
record
2026-06-28 · diff ↗
R
R 4.6.0 released · 2026-04-24
1.0.5
record
2025-09-02 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.3
record
2024-04-12
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2024-04-12
Total releases: 6 / 2 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5
Bundled data: 1.2 MB / 6 files
Download size: 7.4 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("amregtest")

Format

Staxler, T., Department of Wildlife, Fish and Environmental Studies at Swedish University of Agricultural Sciences, Galpern, P., & Spong, G. (2026). amregtest: Runs Allelematch Regression Tests (Version 1.3.2) [Computer software]. https://doi.org/10.32614/CRAN.package.amregtest

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for amregtest version 1.3.2 [Data set]. HJJB, LLC. Data release v2026-10-20. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-20, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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