R Observatory: Metrics for allMT version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

allMT

0.1.1Package record

Acute Lymphoblastic Leukemia Maintenance Therapy Analysis

0packages depend

3.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Tushar MungleCRAN page ↗GitHub ↗Website ↗Issues ↗

Evaluates acute lymphoblastic leukemia maintenance therapy practice at patient and cohort level.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("allMT", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("tmungle/allMT")

Development version from tmungle/allMT. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-allmt

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-allMT

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-allMT

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.8 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09

Show 2 earlier changesHide 2 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.1

READMEYes · 663 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · does not mention 0.1.1Citation fileNoWebsiteYes · pkgdown

Help pages: 16
Examples that run: 92%12 run in a plain check · 1 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

Analyze Acute Lymphoblastic Leukemia Maintenance Therapy

How these are measured

Downloads

3.6K

CRAN downloads in the past year

Rank #10,177 · ~10/day · ~296/mo

Releases R versions

Daily download trend is not available in this view yet.

35830 days

99990 days

3.6K1 year

Compare downloads with other packages →

Also on123 r2u24 autocran

How downloads are counted

Repository

tmungle/allmt ↗Account: tmungle

0Stars

1Forks

0Open issues

0Open PRs

0Releases

33Commits

2Commit identities

License file reads as GPL-3.0 · 33 commits · Last activity 2026-02-04 · The default branch showed an older version (0.1.0) than CRAN on 2026-10-18

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 106
Median days to close, 50 most recently updated closed PRs: 144

Forks over time

2025-09-12 · 12026-07-07 · 1

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/tmungle/allmt on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-02-04 · The repository has a site deploy workflow

pkgdown site last built 2026-02-04

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

16 external dependencies (excludes base and recommended)

Installing allMT adds 129 packages (66 with compiled code, 102 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (1)

R >= 2.10

Imports (14)

dplyr ggplot2 htmlTable plyr readxl reshape2 rio scales stringrsurvivalsurvminer tibble tools (>= 3.6.1)utils

LinkingTo (0)

none

Suggests (4)

bibtex bookdown knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Tushar Mungle

Author, Maintainer since 0.1.0 (2023)

Shekhar Krishnan

Author

Ananya Mahadevan

Author

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.1.1Latest
record
2026-02-03 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.0
record
2023-04-20
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2023-04-20
Total releases: 2 / 3 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 2.6 KB / 3 files
Download size: 444 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("allMT")

Format

Mungle, T., Krishnan, S., & Mahadevan, A. (2026). allMT: Acute Lymphoblastic Leukemia Maintenance Therapy Analysis (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.allMT

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for allMT version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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