airr

2.0.0

AIRR Data Representation Reference Library

3packages depend

30Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Jason Vander HeidenFirst published 2018-05-038 releasesCRAN page ↗GitHub ↗

Schema definitions and read, write and validation tools for data formatted in accordance with the AIRR Data Representation schemas defined by the AIRR Community <https://docs.airr-community.org>.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("airr")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

pak::pak("airr-community/airr-standards")

Development version from airr-community/airr-standards. Requires the pak package.

Release

# one-time r2u setup for Ubuntu (noble)

curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash

# then install

sudo apt install r-cran-airr

Fast Ubuntu binaries via r2u (no compilation). Run the setup once per machine.

bspm (used by r2u) also needs make: sudo apt install make

sudo dnf copr enable iucar/cran

sudo dnf install R-CRAN-airr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

sudo zypper install R-airr

RPMs auto-built from CRAN on openSUSE OBS.

Health

CRAN checks

13OK

Code health

Yes

Tests · ratio 3.57

not tracked

Coverage

100%

Documentation · exports

Yes

Vignettes

Yes

README

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-09
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Downloads

30K

CRAN downloads in the past year

Rank #2,804 · ~82/day · ~2.5K/mo

2.6K30 days

6.8K90 days

30K1 year

Also on295 r2u42 autocran4.4K conda_forge169 bioconda20 c2d4u

Source & community

GitHub ↗

Repository stars, issues, and contributor activity are not tracked yet.

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.1.2

Imports (7)

jsonlite methods basereadr stats basestringi tools baseyaml

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown tibble testthat

Enhances (0)

none

Reverse dependencies

3direct

–indirect (not tracked)

alakazam dowser immunarch

Code

5,797Lines of code

17Exported functions

Code & tests

Open call graph →

Line coverage

67%

Expression

68.9%

Tests / Examples

67.3% / 63% ex

Functions

16 10 exported

Complexity

7.1 avg / 43 max

Call network

16 nodes / 16 edges

Loading call graph…

Lowest coverage

16 functions

Function	Cyclo	Coverage
validate_rearrangement exp	1	0%
write_rearrangement exp	1	0%
extract_field_content	9	0%
load_schema exp	9	29%
validate_entry	43	65%
write_airr exp	4	86%

People & History

People (7)

Maintainer (1)

Jason Vander Heiden

Author, Maintainer

Authors (5)

Author

Author

Author

Author

Author

Release timeline

8 releases. Pick two to compare their code metrics; R releases are shown for context.

2.0.0Latest
2026-06-06 · current release
R
R 4.6.0 released · 2026-04-24
1.6.1
2026-02-18 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.5.0
2023-08-29 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.4.1
2022-08-28 · diff ↗
1.4.0
2022-08-27 · diff ↗
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.3.0
2020-05-27 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
1.2.0
2018-08-18 · diff ↗
1.1.0
2018-05-03

Package metadata

First published: 2018-05-03
Total releases: 8 / 8 yrs
License: CC BY 4.0
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet