R Observatory: Metrics for adepro version 4.2.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

adepro

4.2.7Package record

A 'shiny' Application for the (Audio-)Visualization of Adverse Event Profiles

0packages depend

4.7Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Nicole RethemeierCRAN page ↗GitHub ↗

Contains a 'shiny' application called AdEPro (Animation of Adverse Event Profiles) which (audio-)visualizes adverse events occurring in clinical trials. As this data is usually considered sensitive, this tool is provided as a stand-alone application that can be launched from any local machine on which the data is stored.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("adepro", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("Bayer-Group/BIC-AdEPro")

Development version from Bayer-Group/BIC-AdEPro. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-adepro

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-adepro

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-adepro

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.2 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-23
WARNING12 OK, 1 WARNING2026-06-20
OK13 OK2026-06-09

Show 2 earlier changesHide 2 earlier changes

ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 4.2.7

READMEYes · 1,957 wordsVignettesYes · 1 · staticNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 26 (25 internal)
Examples that run: 0%1 never run
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

adepro Package Manual HTML

How these are measured

Downloads

4.7K

CRAN downloads in the past year

Rank #6,598 · ~13/day · ~392/mo

Releases R versions

Daily download trend is not available in this view yet.

49630 days

1.3K90 days

4.7K1 year

Compare downloads with other packages →

Also on88 r2u28 autocran

How downloads are counted

Repository

Bayer-Group/AdEPro ↗Organization: Bayer-Group

Moved from bayer-group/bic-adepro.

12Stars

1Forks

2Open issues

0Open PRs

3Releases

107Commits

7Commit identities

adverse-eventsbayer-not-classifiedbayer-reg-nonebeat-not-applicableclinical-trialsdata-insightsvisualizationshiny-apps

License file reads as GPL-3.0 · 107 commits · Last activity 2026-02-11 · 0% stars, 30d · Default branch at 4.4.1, ahead of CRAN 4.2.7 (checked 2026-10-22)

Responsiveness

How these are sampled

PRs merged (all time): 93%
Median days to close, 50 most recently updated closed issues: 84
Median days to close, 50 most recently updated closed PRs: 2

Stars over time

2025-06-05 · 102026-09-15 · 12

How these are measured

PracticesBeta

9 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/bayer-group/bic-adepro on 2026-10-22.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux

Governance and community (3)

Code of conductContributing guideCODEOWNERS

Docs source (1)

README.Rmd

Reproducibility and dev environment (2)

renvdata-raw/

Show all practicesHide 1 practice

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

20 external dependencies (excludes base and recommended)

Installing adepro adds 85 packages (44 with compiled code, 62 MB of source tarballs). Heaviest: stringi 11 MB, bslib 5.6 MB, seriation 4.3 MB.

Depends (3)

R >= 3.5.0shinyBS seriation

Imports (19)

graphicsMASSV8 forcats hereutilsshinyjs shiny audio shape Cairo dplyr readr rlang tidyr havenstatsshinyWidgets DT

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (4)

Nicole Rethemeier

Maintainer since 4.2.7 (2025) · added in 4.1.0

Steffen Jeske

Author · added in 3.0.0

Bodo Kirsch

Author · added in 4.1.2

Christoph Tasto

Author

Previously maintained by Bodo Kirsch (4.1.0 to 4.1.2) and Nicole Mentenich (0.1.0 to 3.2.0).

Listed in earlier versions (3)

Show 3 peopleHide 3 people

Bastian Becker

no longer listed · 0.1.0 to 3.2.0

Jens Hooge

no longer listed · 0.1.0 to 2.0.0

Nicole Mentenich

no longer listed · 0.1.0 to 3.2.0

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
4.2.7Latest
record
2025-03-25 · current release · diff ↗
4.1.2
record
2024-09-30 · diff ↗
unarchivedReturned to CRAN
2024-04-25
4.1.0
record
2024-04-25 · diff ↗
R
R 4.4.0 released · 2024-04-24
archivedRemoved from CRAN
2024-04-20
issues were not corrected despite reminders
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
3.2.0
record
2021-07-06 · diff ↗
3.1.0
record
2021-06-29 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
3.0.0
record
2020-03-26 · diff ↗
R
R 3.6.0 released · 2019-04-26

Show 4 earlier eventsHide 4 earlier events

R
R 3.5.0 released · 2018-04-23
2.0.0
record
2018-02-08 · diff ↗
0.1.0
record
2017-07-12
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-07-12
Total releases: 8 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Download size: 69 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("adepro")

Format

Rethemeier, N., Jeske, S., Kirsch, B., & Tasto, C. (2025). adepro: A 'shiny' Application for the (Audio-)Visualization of Adverse Event Profiles (Version 4.2.7) [Computer software]. https://doi.org/10.32614/CRAN.package.adepro

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for adepro version 4.2.7 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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