R Observatory: Metrics for acnr version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

acnr

1.0.0

Annotated Copy-Number Regions

1packages depend

6.9Kdownloads / year

93.1%test coverage

11/13checks pass

Overview

About

Maintained by Morgane Pierre-JeanFirst published 2014-11-192 releasesCRAN page ↗GitHub ↗

Provides SNP array data from different types of copy-number regions. These regions were identified manually by the authors of the package and may be used to generate realistic data sets with known truth.

Latest changes · 1.0.0

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("acnr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("mpierrejean/acnr")

Development version from mpierrejean/acnr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-acnr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-acnr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-acnr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.35

93.1%

Coverage · measured lines

100%

Documentation · exports

0

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 151 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 38%

Downloads

6.9K

CRAN downloads in the past year

Rank #8,037 · ~19/day · ~578/mo

Releases R versions

Daily download trend is not available in this view yet.

36030 days

1.1K90 days

6.9K1 year

Compare downloads with other packages →

Also on233 r2u17 autocran

Repository

GitHub ↗ mpierrejean/acnr

1Stars

0Forks

3Open issues

0Open PRs

0Releases

68Commits

5Contributors

68 commits · Last activity 2021-11-18

Stars over time

2016-06-07 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 1 family in the upstream repository

Checks run against github.com/mpierrejean/acnr on 2026-08-09.

Continuous integration (2)

Travis CIAppVeyor

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (0)

none

LinkingTo (0)

none

Suggests (4)

R.utils knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

2indirect

jointseg

Code & Tests

People & History

People (2)

Maintainer (1)

Morgane Pierre-Jean

Author, Maintainer

Authors (2)

Morgane Pierre-Jean

Author, Maintainer

Pierre Neuvial

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.0.0Latest
2017-04-18 · current release · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
0.2.4
2014-11-19
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-11-19
Total releases: 2 / 12 yrs
License: LGPL (>= 2.1)
Minimum R: ≥ 2.10
Download size: 2.7 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("acnr")

Format

Pierre-Jean, M., & Neuvial, P. (2017). acnr: Annotated Copy-Number Regions (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.acnr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for acnr version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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