aIc
Testing for Compositional Pathologies in Datasets
Description
A set of tests for compositional pathologies. Tests for coherence of correlations with aIc.coherent() as suggested by (Erb et al. (2020) <doi:10.1016/j.acags.2020.100026>), compositional dominance of distance with aIc.dominant(), compositional perturbation invariance with aIc.perturb() as suggested by (Aitchison (1992) <doi:10.1007/BF00891269>) and singularity of the covariation matrix with aIc.singular(). Currently tests five data transformations: prop, clr, TMM, TMMwsp, and RLE from the R packages 'ALDEx2', 'edgeR' and 'DESeq2' (Fernandes et al (2014) <doi:10.1186/2049-2618-2-15>, Anders et al. (2013)<doi:10.1038/nprot.2013.099>).
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘Greg Gloor <ggloor@uwo.ca>’
No Authors@R field in DESCRIPTION.
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Authors@R: person(given = "Greg",
family = "Gloor",
role = c("aut", "cre"),
email = "ggloor@uwo.ca")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Greg Gloor <ggloor@uwo.ca>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Greg",
family = "Gloor",
role = c("aut", "cre"),
email = "ggloor@uwo.ca")
as necessary.
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Greg Gloor <ggloor@uwo.ca>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Greg",
family = "Gloor",
role = c("aut", "cre"),
email = "ggloor@uwo.ca")
as necessary.
CRAN incoming feasibility
Maintainer: ‘Greg Gloor <ggloor@uwo.ca>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: person(given = "Greg",
family = "Gloor",
role = c("aut", "cre"),
email = "ggloor@uwo.ca")
as necessary.