R Observatory: Metrics for ZINB.GP version 1.0.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ZINB.GP

1.0.0Package record

Bayesian Zero-Inflated Negative Binomial Gaussian Process Models

0packages depend

547downloads / year

94.5%test coverage

13/13flavors OK

Overview

About

Maintained by Hsin-Hsiung HuangCRAN page ↗GitHub ↗Website ↗Issues ↗

Fits Bayesian zero-inflated negative binomial regression models with Gaussian process random effects for spatial, temporal, or spatiotemporal count data. Provides Markov chain Monte Carlo sampling, configurable random effects in the zero-inflation and count components, and posterior predictive draws. Implements a full GP version of the methods described by He and Huang (2024) doi:10.1016/j.jspi.2023.106098.

Changes in 1.0.0

Initial release

Fits Bayesian zero-inflated negative binomial models with spatial, temporal, or spatiotemporal Gaussian process random effects.
Supports Gaussian process effects in the zero-inflation component, count component, or both.
Provides posterior draws for fixed effects, random effects, covariance parameters, dispersion, latent at-risk states, and predictive counts.
Includes simulation and Oregon landslide case-study vignettes.
Includes input validation and tests for every supported model configuration.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ZINB.GP", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("KingJMS1/GP_ZINB_R")

Development version from KingJMS1/GP_ZINB_R. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-zinb.gp

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ZINB.GP

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ZINB.GP

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.5 min · r-oldrel-windows-x86_64

Status changes

OK13 OKNow
OK5 OK2026-09-15

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.0

READMEYes · 960 wordsVignettesYes · 2 · dynamicNEWSYes · 67% structured · mentions 1.0.0Citation fileNoWebsiteYes · pkgdown

Help pages: 25 (7 internal)
Examples that run: 100%6 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (2)

How these are measured

Downloads

547

CRAN downloads in the past year

Rank #23,052 · ~1/day · ~46/mo

Releases R versions

Daily download trend is not available in this view yet.

50130 days

54790 days

5471 year

Compare downloads with other packages →

Also on8 r2u1 autocran

How downloads are counted

Repository

kingjms1/gp_zinb_r ↗Account: KingJMS1

2Stars

0Forks

0Open issues

0Open PRs

0Releases

75Commits

1Commit identities

75 commits · Last activity 2026-09-04 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2026-09-15 · 02026-09-16 · 2

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/kingjms1/gp_zinb_r on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (3)

pkgdown

GitHub Pages site last deployed 2026-09-04 · The repository has a site deploy workflow

pkgdown site last built 2026-09-04, before release 1.0.0 (2026-09-14)

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

lintr

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Installing ZINB.GP adds 16 packages (11 with compiled code, 8.2 MB of source tarballs). Heaviest: LaplacesDemon 2.0 MB, mvtnorm 1.0 MB, vctrs 1.0 MB.

Depends (0)

none

Imports (7)

BayesLogit LaplacesDemonMASSMatrixmsm mvtnormstats

LinkingTo (0)

none

Suggests (5)

coda knitr posterior rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Hsin-Hsiung Huang

Qing He

Author

Mahlon Scott

Author

Releases (1)

1.0.0Latest
record
first seen 2026-09-14 · current release
R
R 4.6.0 released · 2026-04-24

Package metadata

First seen: 2026-09-14
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Download size: 1.6 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ZINB.GP")

Format

Huang, H., He, Q., & Scott, M. (2026). ZINB.GP: Bayesian Zero-Inflated Negative Binomial Gaussian Process Models (Version 1.0.0) [Computer software]. https://doi.org/10.32614/CRAN.package.ZINB.GP

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ZINB.GP version 1.0.0 [Data set]. HJJB, LLC. Data release v2026-10-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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