R Observatory: Metrics for WormTensor version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-06-29. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.1.2, its last release before removal.

WormTensor

0.1.2

A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans'

0packages depend

2Kdownloads / year

–test coverage

–checks pass

Overview

About

Maintained by Kentaro Yamamoto3 releasesCRAN page ↗GitHub ↗

A toolkit to detect clusters from distance matrices. The distance matrices are assumed to be calculated between the cells of multiple animals ('Caenorhabditis elegans') from input time-series matrices. Some functions for generating distance matrices, performing clustering, evaluating the clustering, and visualizing the results of clustering and evaluation are available. We're also providing the download function to retrieve the calculated distance matrices from 'figshare' https://figshare.com.

Install

R (source archive)pak (dev)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/WormTensor/WormTensor_0.1.2.tar.gz"
pkgFile <- "WormTensor_0.1.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rikenbit/WormTensor")

Development version from rikenbit/WormTensor. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-wormtensor

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-WormTensor

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.23

not tracked

Coverage

100%

Documentation · exports

14

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-01
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-31
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

ERROR2026-05-30
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-09
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 14%
Documented parameters: 100%
Return-value docs: 75%
References docs: 11%

Downloads

2K

CRAN downloads in the past year

Rank #24,181 · ~5/day · ~163/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

33090 days

2K1 year

Compare downloads with other packages →

Also on121 r2u1 autocran

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (14)

rTensor usedist dtwclust clusterSim clValid aricodeclusterggplot2 Rtsne uwot factoextra ggrepel cowplotmethods

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Kentaro Yamamoto

Author, Maintainer

Authors (3)

Kentaro Yamamoto

Author, Maintainer

Koki Tsuyuzaki

Author

Itoshi Nikaido

Author

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

archivedRemoved from CRAN
2026-06-29
issues were not corrected in time
R
R 4.6.0 released · 2026-04-24
0.1.2
2025-07-21 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1.1
2024-07-23 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.0
2022-09-08
R
R 4.2.0 released · 2022-04-22

Package metadata

Total releases: 3
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Download size: 3.4 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("WormTensor")

Format

Yamamoto, K., Tsuyuzaki, K., & Nikaido, I. (n.d.). WormTensor: A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans' (Version 0.1.2) [Computer software]. Retrieved August 15, 2026, from https://CRAN.R-project.org/package=WormTensor

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for WormTensor version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-08-15. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-15, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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