R Observatory: Metrics for WormTensor version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-06-29. Its history is shown below.

Reason: issues were not corrected in time

Details below reflect version 0.1.2, its last release before removal.

WormTensor

0.1.2Package record

A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans'

0packages depend

1.5Kdownloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Kentaro YamamotoCRAN page ↗GitHub ↗

A toolkit to detect clusters from distance matrices. The distance matrices are assumed to be calculated between the cells of multiple animals ('Caenorhabditis elegans') from input time-series matrices. Some functions for generating distance matrices, performing clustering, evaluating the clustering, and visualizing the results of clustering and evaluation are available. We're also providing the download function to retrieve the calculated distance matrices from 'figshare' https://figshare.com.

Changes in 0.1.2

Update worm_download.R.

From NEWS.md in the release

Install

R (source archive)pak (dev)

url <- "https://cran.r-project.org/src/contrib/Archive/WormTensor/WormTensor_0.1.2.tar.gz"
pkgFile <- "WormTensor_0.1.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.1.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rikenbit/WormTensor")

Development version from rikenbit/WormTensor. Installs pak first if it is not already available.

Health

CRAN checks

CRAN check results are not tracked yet.

Status changes

OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK13 OK2026-06-04
ERROR12 OK, 1 ERROR2026-06-01
OK13 OK2026-05-31

Show 4 earlier changesHide 4 earlier changes

ERROR12 OK, 1 ERROR2026-05-30
OK14 OK2026-04-10
ERROR13 OK, 1 ERROR2026-04-09
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.2

READMENoVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 0.1.2Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 9
Examples that run: 14%1 run in a plain check · 6 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 75%
Documented parameters: 100%
Return-value docs: 75%
Help pages citing references: 11%

How these are measured

Downloads

1.5K

CRAN downloads in the past year

Rank #25,761 · ~4/day · ~127/mo

Releases R versions

Daily download trend is not available in this view yet.

030 days

090 days

1.5K1 year

Compare downloads with other packages →

Also on82 r2u7 autocran

How downloads are counted

Dependencies

Declared dependencies

15 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (14)

rTensor usedist dtwclust clusterSim clValid aricodeclusterggplot2 Rtsne uwot factoextra ggrepel cowplotmethods

LinkingTo (0)

none

Suggests (3)

knitr rmarkdown testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (3)

Kentaro Yamamoto

Author, Maintainer since 0.1.0 (2022)

Koki Tsuyuzaki

Author

Itoshi Nikaido

Author

Releases (3)

Pick two releases to compare their code metrics.

archivedRemoved from CRAN
2026-06-29
issues were not corrected in time
R
R 4.6.0 released · 2026-04-24
0.1.2
record
2025-07-21 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.1.1
record
2024-07-23 · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.0
record
2022-09-08
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-09-08
Total releases: 3 / 4 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Download size: 3.4 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("WormTensor")

Format

Yamamoto, K., Tsuyuzaki, K., & Nikaido, I. (n.d.). WormTensor: A Clustering Method for Time-Series Whole-Brain Activity Data of 'C. elegans' (Version 0.1.2) [Computer software]. Retrieved October 27, 2026, from https://CRAN.R-project.org/package=WormTensor

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for WormTensor version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →