R Observatory: Metrics for WallomicsData version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

WallomicsData

1.0Package record

Datasets for Multi-Omics Integration in a Plant Abiotic Stress Context

1packages depend

2.9Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Sébastien DéjeanCRAN page ↗

Datasets from the WallOmics project. Contains phenomics, metabolomics, proteomics and transcriptomics data collected from two organs of five ecotypes of the model plant Arabidopsis thaliana exposed to two temperature growth conditions. Exploratory and integrative analyses of these data are presented in Durufle et al (2020) doi:10.1093/bib/bbaa166 and Durufle et al (2020) doi:10.3390/cells9102249.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("WallomicsData", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-wallomicsdata

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-WallomicsData

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-WallomicsData

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.1 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-07-16

Show 2 earlier changesHide 2 earlier changes

WARNING12 OK, 1 WARNING2026-07-15
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 16 (1 internal)includes a package overview page
Examples that run: 100%15 run in a plain check
Exported functions with examples: not tracked
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 0%

How these are measured

Downloads

2.9K

CRAN downloads in the past year

Rank #19,651 · ~8/day · ~238/mo

Releases R versions

Daily download trend is not available in this view yet.

23630 days

66890 days

2.9K1 year

Compare downloads with other packages →

Also on106 r2u6 autocran

How downloads are counted

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Installing WallomicsData adds no packages beyond those that come with R.

Depends (1)

R >= 2.10

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Imports 1

Depends, Imports or LinkingTo, most downloaded first

kpcaIG

How these are counted

Code & Tests

Datasets

People & History

People (3)

Sébastien Déjean

Author, Maintainer since 1.0 (2022)

Harold Duruflé

Author

Aurélie Mercadié

Author

Releases (1)

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0Latest
record
2022-04-15 · current release
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-04-15
Total releases: 1 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 2.2 MB / 15 files
Download size: 2.2 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("WallomicsData")

Format

Déjean, S., Duruflé, H., & Mercadié, A. (2022). WallomicsData: Datasets for Multi-Omics Integration in a Plant Abiotic Stress Context (Version 1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.WallomicsData

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for WallomicsData version 1.0 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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