R Observatory: Metrics for TriadSim version 0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

TriadSim

0.3.1

Simulating Triad Genomewide Genotypes

0packages depend

2.7Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Min ShiFirst published 2017-05-135 releasesCRAN page ↗

Simulate genotypes for case-parent triads, case-control, and quantitative trait samples with realistic linkage diequilibrium structure and allele frequency distribution. For studies of epistasis one can simulate models that involve specific SNPs at specific sets of loci, which we will refer to as "pathways". TriadSim generates genotype data by resampling triad genotypes from existing data. The details of the method is described in the manuscript under preparation "Simulating Autosomal Genotypes with Realistic Linkage Disequilibrium and a Spiked in Genetic Effect" Shi, M., Umbach, D.M., Wise A.S., Weinberg, C.R.

Install

R (CRAN)Ubuntu (r2u)

install.packages("TriadSim", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-triadsim

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1ERROR12OK

Failing flavors

ERROR r-oldrel-macos-arm64

Slowest check: 5.1 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

5

Dependencies · direct

Check history

ERROR2026-03-10
12 OK · 0 NOTE · 0 WARNING · 2 ERROR · 0 FAILURE

Documentation

READMEYes · 168 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.7K

CRAN downloads in the past year

Rank #17,327 · ~7/day · ~227/mo

Releases R versions

Daily download trend is not available in this view yet.

16230 days

64090 days

2.7K1 year

Compare downloads with other packages →

Also on109 r2u

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.2.2

Imports (5)

methodsparallelsnpStats foreach doParallel

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Min Shi

Author, Maintainer

Authors (1)

Min Shi

Author, Maintainer

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.3.1Latest
2026-02-22 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.3.0
2021-09-08 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.2.0
2020-07-12 · diff ↗
unarchivedReturned to CRAN
2020-07-12
archivedRemoved from CRAN
2020-07-07
the request of the maintainer
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.1.1
2017-05-25 · diff ↗
0.0.1
2017-05-13

Show 1 earlier events

R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-05-13
Total releases: 5 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.2.2
Bundled data: 16 KB / 2 files
Download size: 705 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("TriadSim")

Format

Shi, M. (2026). TriadSim: Simulating Triad Genomewide Genotypes (Version 0.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.TriadSim

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for TriadSim version 0.3.1 [Data set]. HJJB, LLC. Data release v2026-08-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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