R Observatory: Metrics for TriLLIEM version 0.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

TriLLIEM

0.1.1

Log-Linear Modelling of Triad Genotype Data

0packages depend

1.1Kdownloads / year

86.3%test coverage

13/13checks pass

Overview

About

Maintained by Kevin Heda ZhaoFirst published 2026-03-052 releasesCRAN page ↗GitHub ↗

Triad Log-Linear modelling of Imprinting Environmental interactions, and Maternal effects (TriLLIEM). This is an implementation of the log-linear model described in a series of papers, see for example Ainsworth et al. (2010) doi:10.1002/gepi.20547.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("TriLLIEM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("KevinHZhao/TriLLIEM")

Development version from KevinHZhao/TriLLIEM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-trilliem

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-TriLLIEM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-TriLLIEM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.5 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.42

86.3%

Coverage · measured lines

100%

Documentation · exports

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-14
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-10
8 OK · 0 NOTE · 0 WARNING · 5 ERROR · 0 FAILURE

Documentation

READMEYes · 7 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 22%

Downloads

1.1K

CRAN downloads in the past year

Rank #22,926 · ~3/day · ~90/mo

Releases R versions

Daily download trend is not available in this view yet.

13830 days

45690 days

1.1K1 year

Compare downloads with other packages →

Also on43 r2u19 autocran

Repository

GitHub ↗ kevinhzhao/trilliem

2Stars

0Forks

0Open issues

0Open PRs

0Releases

22Commits

1Contributors

22 commits · Last activity 2026-03-11 · 0% stars, 30d

Stars over time

2025-05-27 · 12026-07-07 · 2

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/kevinhzhao/trilliem on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (3)

dplyr rlang Rdpack

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown withr testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Kevin Heda Zhao

Author, Maintainer

Authors (2)

Kevin Heda Zhao

Author, Maintainer

Kelly Burkett

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.1Latest
2026-03-12 · current release · diff ↗
0.1.0
2026-03-10
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-03-05
Total releases: 2 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.1.0
Bundled data: 0.7 KB / 1 file
Download size: 86 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("TriLLIEM")

Format

Zhao, K. H., & Burkett, K. (2026). TriLLIEM: Log-Linear Modelling of Triad Genotype Data (Version 0.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.TriLLIEM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for TriLLIEM version 0.1.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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