R Observatory: Metrics for ThermalSampleR version 0.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ThermalSampleR

0.1.2Package record

Calculate Sample Sizes Required for Critical Thermal Limits Experiments

0packages depend

2.6Kdownloads / year

42.0%test coverage

9/13flavors OK

Overview

About

Maintained by Clarke JM van SteenderenCRAN page ↗

We present a range of simulations to aid researchers in determining appropriate sample sizes when performing critical thermal limits studies (e.g. CTmin/CTmin experiments). A number of wrapper functions are provided for plotting and summarising outputs from these simulations. This package is presented in van Steenderen, C.J.M., Sutton, G.F., Owen, C.A., Martin, G.D., and Coetzee, J.A. Sample size assessments for thermal physiology studies: An R package and R Shiny application. 2023. Physiological Entomology. doi:10.1111/phen.12416. The GUI version of this package is available on the R Shiny online server at: https://clarkevansteenderen.shinyapps.io/ThermalSampleR_Shiny/ , or it is accessible via GitHub at https://github.com/clarkevansteenderen/ThermalSampleR_Shiny/. We would like to thank Grant Duffy (University of Otago, Dundedin, New Zealand) for granting us permission to use the source code for the Test of Total Equivalency function.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ThermalSampleR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-thermalsampler

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ThermalSampleR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ThermalSampleR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

4NOTE9OK

Check messages

NOTERd contentsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Rd files without \usage:
  ‘boot_one.Rd’ ‘boot_two.Rd’ ‘equiv_tost.Rd’ ‘plot_one_group.Rd’
  ‘plot_two_groups.Rd’
\arguments should not be documented without \usage.

NOTEdependencies in R coder-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Namespaces in Imports field not imported from:
  ‘MASS’ ‘base’ ‘graphics’ ‘janitor’ ‘rlang’ ‘testthat’ ‘utils’
All declared Imports should be used.

CRAN check page ↗

Slowest check: 2.7 min · r-oldrel-windows-x86_64

Status changes

NOTE9 OK, 4 NOTENow
NOTE11 OK, 2 NOTE2026-06-09
ERROR10 OK, 2 NOTE, 1 ERROR2026-06-08
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.1.2

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 6
Examples that run: 0%5 only when donttest examples are enabled (R CMD check --as-cran)
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

vignette HTML

How these are measured

Downloads

2.6K

CRAN downloads in the past year

Rank #17,474 · ~7/day · ~220/mo

Releases R versions

Daily download trend is not available in this view yet.

30230 days

73790 days

2.6K1 year

Compare downloads with other packages →

Also on68 r2u7 autocran

How downloads are counted

Dependencies

Declared dependencies

14 external dependencies (excludes base and recommended)

Installing ThermalSampleR adds 60 packages (27 with compiled code, 39 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, cowplot 1.6 MB.

Depends (1)

R >= 2.10

Imports (16)

tidyr dplyr purrr rlangMASSstatsgraphicsbase magrittrutilsggplot2 cowplot EnvStats sn janitor testthat

LinkingTo (0)

none

Suggests (2)

rmarkdown knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (3)

Clarke JM van Steenderen

Author, Maintainer since 0.1.0 (2022)

Compiled the R package, and the associated R Shiny application.

Guy Frederick Sutton

Author

Wrote original R functions, and adapted the Duffy et. al. 2021 R function into this package.

Grant Duffy

Copyright holder

Granted permission to use the source code for the Test of Total Equivalency function.

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
unarchivedReturned to CRAN
2024-02-18
0.1.2Latest
record
2024-02-18 · current release · diff ↗
archivedRemoved from CRAN
2024-01-11
issues were not corrected in time
0.1.1
record
2023-06-13 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.1.0
record
2022-02-21
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-02-21
Total releases: 3 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 2.10
Bundled data: 0.3 KB / 1 file
Download size: 434 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ThermalSampleR")

Format

van Steenderen, C. J., Duffy, G., & Sutton, G. F. (2024). ThermalSampleR: Calculate Sample Sizes Required for Critical Thermal Limits Experiments (Version 0.1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.ThermalSampleR

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ThermalSampleR version 0.1.2 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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