TaxaNorm
Feature-Wise Normalization for Microbiome Sequencing Data
Description
A novel feature-wise normalization method based on a zero-inflated negative binomial model. This method assumes that the effects of sequencing depth vary for each taxon on their mean and also incorporates a rational link of zero probability and taxon dispersion as a function of sequencing depth. Ziyue Wang, Dillon Lloyd, Shanshan Zhao, Alison Motsinger-Reif (2023) <doi:10.1101/2023.10.31.563648>.
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CRAN Check Status
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | ERROR |
| r-release-macos-x86_64 | ERROR |
| r-release-windows-x86_64 | ERROR |
Check details (4 non-OK)
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.4/TaxaNorm.Rcheck/00install.out' for details.
package dependencies
Package required but not available: ‘microbiome’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Package required but not available: ‘microbiome’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.5/TaxaNorm.Rcheck/00install.out' for details.
Check History
ERROR 8 OK · 0 NOTE · 0 WARNING · 6 ERROR · 0 FAILURE Mar 10, 2026
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.6/TaxaNorm.Rcheck/00install.out' for details.
package dependencies
Packages required but not available: 'microbiome', 'phyloseq' See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Package required but not available: ‘microbiome’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
package dependencies
Package required but not available: ‘microbiome’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.5/TaxaNorm.Rcheck/00install.out' for details.
whether package can be installed
Installation failed. See 'd:/Rcompile/CRANpkg/local/4.4/TaxaNorm.Rcheck/00install.out' for details.