R Observatory: Metrics for TRAMPR version 1.0-10

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

TRAMPR

1.0-10

'TRFLP' Analysis and Matching Package for R

1packages depend

29.9Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Rich FitzJohnFirst published 2006-11-139 releasesCRAN page ↗GitHub ↗

Matching terminal restriction fragment length polymorphism ('TRFLP') profiles between unknown samples and a database of known samples. 'TRAMPR' facilitates analysis of many unknown profiles at once, and provides tools for working directly with electrophoresis output through to generating summaries suitable for community analyses with R's rich set of statistical functions. 'TRAMPR' also resolves the issues of multiple 'TRFLP' profiles within a species, and shared 'TRFLP' profiles across species.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("TRAMPR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("richfitz/TRAMPR")

Development version from richfitz/TRAMPR. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-trampr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-TRAMPR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-TRAMPR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.4 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

0

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 10 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 94%
Documented parameters: 84%
Return-value docs: 55%
References docs: 8%

Downloads

29.9K

CRAN downloads in the past year

Rank #2,627 · ~82/day · ~2.5K/mo

Releases R versions

Daily download trend is not available in this view yet.

2.1K30 days

6.7K90 days

29.9K1 year

Compare downloads with other packages →

Also on107 r2u27 autocran

Repository

GitHub ↗ richfitz/trampr

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2025-06-02

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/richfitz/trampr on 2026-08-16.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

Makefile

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.4

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Ecfun

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Rich FitzJohn

Author, Maintainer · added in 1.0-10

Authors (2)

Rich FitzJohn

Author, Maintainer · added in 1.0-10

Ian Dickie

Author · added in 1.0-10

Listed in earlier versions (1)

Rich FitzJohn & Ian Dickie

no longer listed · 1.0-1 to 1.0-9

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0-10Latest
2022-02-07 · current release · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0-9
2020-02-28 · diff ↗
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
1.0-8
2016-06-09 · diff ↗
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10

Show 19 earlier events

R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
1.0-7
2012-03-23 · diff ↗
R
R 2.14.0 released · 2011-10-31
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
R
R 2.10.0 released · 2009-10-26
1.0-6
2009-10-15 · diff ↗
1.0-5
2009-05-24 · diff ↗
R
R 2.9.0 released · 2009-04-17
R
R 2.8.0 released · 2008-10-20
R
R 2.7.0 released · 2008-04-22
R
R 2.6.0 released · 2007-10-03
1.0-4
2007-06-05 · diff ↗
R
R 2.5.0 released · 2007-04-24
1.0-2
2006-11-22 · diff ↗
1.0-1
2006-11-13
R
R 2.4.0 released · 2006-10-03

Package metadata

First published: 2006-11-13
Total releases: 9 / 20 yrs
License: GPL-2 OSI
Minimum R: ≥ 2.4
Bundled data: 32 KB / 2 files
Download size: 316 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("TRAMPR")

Format

FitzJohn, R., & Dickie, I. (2022). TRAMPR: 'TRFLP' Analysis and Matching Package for R (Version 1.0-10) [Computer software]. https://doi.org/10.32614/CRAN.package.TRAMPR

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for TRAMPR version 1.0-10 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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