R Observatory: Metrics for TCRconvertR version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

TCRconvertR

1.0Package record

Convert TCR Gene Names

0packages depend

5.3Kdownloads / year

95.2%test coverage

13/13flavors OK

Overview

About

Maintained by Emma BishopCRAN page ↗GitHub ↗Website ↗Issues ↗

Convert T Cell Receptor (TCR) gene names between the 10X Genomics, Adaptive Biotechnologies, and ImMunoGeneTics (IMGT) nomenclatures.

Changes in 1.0

Initial CRAN submission.

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("TCRconvertR", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("seshadrilab/tcrconvertr")

Development version from seshadrilab/tcrconvertr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-tcrconvertr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-TCRconvertR

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-TCRconvertR

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.1 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0

READMEYes · 258 wordsVignettesYes · 2 · dynamicNEWSYes · 67% structured · mentions 1.0Citation fileNoWebsiteYes · pkgdown

The repository also keeps web-only articles.

Help pages: 10 (7 internal)
Examples that run: 100%10 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (2)

Get started HTML
Using a custom species HTML

How these are measured

Downloads

5.3K

CRAN downloads in the past year

Rank #15,075 · ~15/day · ~442/mo

Releases R versions

Daily download trend is not available in this view yet.

29230 days

78290 days

5.3K1 year

Compare downloads with other packages →

Also on68 r2u3 autocran

How downloads are counted

Repository

seshadrilab/tcrconvertr ↗Organization: seshadrilab

6Stars

0Forks

6Open issues

0Open PRs

1Releases

151Commits

2Commit identities

151 commits · Last activity 2026-05-15 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: 33
Median days to close, 50 most recently updated closed PRs: 4

Stars over time

2025-10-03 · 52026-07-07 · 6

How these are measured

PracticesBeta

10 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/seshadrilab/tcrconvertr on 2026-10-11.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (4)

README.Rmdpkgdown

GitHub Pages site last deployed 2026-05-15 · The repository has a site deploy workflow

pkgdown site last built 2026-05-15

Coverage (1)

Coverage reporting

CRAN release process (1)

cran-comments.md

Show all practicesHide 1 practice

Lint, format, editor (2)

Lint workflowRStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Installing TCRconvertR adds 1 package (1 with compiled code, 11 KB of source tarballs). Heaviest: rappdirs 11 KB.

Depends (0)

none

Imports (3)

statsutilsrappdirs

LinkingTo (0)

none

Suggests (5)

knitr rmarkdown roxyglobals testthat mockery

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Emma Bishop

Releases (1)

R
R 4.6.0 released · 2026-04-24
1.0Latest
record
2025-04-17 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-04-17
Total releases: 1 / 1 yrs
License: MIT + file LICENSE OSI
Download size: 69 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("TCRconvertR")

Format

Bishop, E. (2025). TCRconvertR: Convert TCR Gene Names (Version 1.0) [Computer software]. https://doi.org/10.32614/CRAN.package.TCRconvertR

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for TCRconvertR version 1.0 [Data set]. HJJB, LLC. Data release v2026-10-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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