R Observatory: Metrics for SubVis version 2.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

SubVis

2.0.2

Visual Exploration of Protein Alignments Resulting from Multiple Substitution Matrices

0packages depend

2.2Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Scott BarloweFirst published 2016-06-165 releasesCRAN page ↗

Substitution matrices are important parameters in protein alignment algorithms. These matrices represent the likelihood that an amino acid will be substituted for another during mutation. This tool allows users to apply predefined and custom matrices and then explore the resulting alignments with interactive visualizations. 'SubVis' requires the availability of a web browser.

Install

R (CRAN)Ubuntu (r2u)

install.packages("SubVis", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-subvis

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 2.9 min · r-release-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: not tracked
Return-value docs: 0%
References docs: 0%

Downloads

2.2K

CRAN downloads in the past year

Rank #19,828 · ~6/day · ~183/mo

Releases R versions

Daily download trend is not available in this view yet.

15230 days

55690 days

2.2K1 year

Compare downloads with other packages →

Also on85 r2u

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.3.0shiny Biostrings

Imports (0)

none

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Listed in earlier versions (1)

Scott Barlowe

no longer listed · 1.0.0 to 2.0.2

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
2.0.2Latest
2017-05-23 · current release · diff ↗
R
R 3.4.0 released · 2017-04-21
2.0.1
2017-01-12 · diff ↗
2.0.0
2017-01-06 · diff ↗
1.1.0
2016-06-29 · diff ↗
1.0.0
2016-06-16
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-06-16
Total releases: 5 / 10 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.3.0
Download size: 45 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SubVis")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SubVis version 2.0.2 [Data set]. HJJB, LLC. Data release v2026-08-17. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-17, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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