R Observatory: Metrics for StempCens version 1.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

StempCens

1.2.0

Spatio-Temporal Estimation and Prediction for Censored/Missing Responses

0packages depend

7.1Kdownloads / year

0.0%test coverage

13/13checks pass

Overview

About

Maintained by Larissa A. MatosFirst published 2019-02-083 releasesCRAN page ↗

It estimates the parameters of spatio-temporal models with censored or missing data using the SAEM algorithm (Delyon et al., 1999). This algorithm is a stochastic approximation of the widely used EM algorithm and is particularly valuable for models in which the E-step lacks a closed-form expression. It also provides a function to compute the observed information matrix using the method developed by Louis (1982). To assess the performance of the fitted model, case-deletion diagnostics are provided.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("StempCens", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-stempcens

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-StempCens

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-StempCens

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.9 min · r-devel-windows-x86_64

Code health

Yes

Tests · ratio 0.96

0.0%

Coverage · measured lines

100%

Documentation · exports

9

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-13
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-09
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 430 wordsVignettesNopkgdown siteNoNEWSYes · 67% structuredCode of conductNoContributing guideNo

Examples that run: 43%
Documented parameters: 99%
Return-value docs: 100%
References docs: 13%

Downloads

7.1K

CRAN downloads in the past year

Rank #5,654 · ~19/day · ~590/mo

Releases R versions

Daily download trend is not available in this view yet.

24530 days

1.4K90 days

7.1K1 year

Compare downloads with other packages →

Also on419 r2u12 autocran75 c2d4u

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (9)

Rcppstatsutilsmvtnorm tmvtnorm MCMCglmm ggplot2gridRdpack

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Larissa A. Matos

Author, Maintainer · added in 1.1.0

Authors (2)

Larissa A. Matos

Author, Maintainer · added in 1.1.0

Katherine L. Valeriano

Author · added in 1.1.0

Contributors (1)

Victor H. Lachos

Contributor

Listed in earlier versions (2)

Larissa Avila Matos

no longer listed · 0.1.0

Katherine A. L. Valeriano

no longer listed · 0.1.0

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.2.0Latest
2025-06-11 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.1.0
2020-10-21 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.1.0
2019-02-08
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-02-08
Total releases: 3 / 7 yrs
License: GPL (>= 2) OSI
Download size: 78 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Missing Data

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("StempCens")

Format

A. Matos, L., L. Valeriano, K., & Lachos, V. H. (2025). StempCens: Spatio-Temporal Estimation and Prediction for Censored/Missing Responses (Version 1.2.0) [Computer software]. https://doi.org/10.32614/CRAN.package.StempCens

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for StempCens version 1.2.0 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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