R Observatory: Metrics for SingleCellStat version 0.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

SingleCellStat

0.3.1Package record

A Toolkit for Statistical Analysis of Single-Cell Omics Data

0packages depend

2Kdownloads / year

–test coverage

11/13flavors OK

Overview

About

Maintained by Jun ChenCRAN page ↗

A suite of statistical methods for analysis of single-cell omics data including linear model-based methods for differential abundance analysis for individual level single-cell RNA-seq data. For more details see Zhang, et al. (Submitted to Bioinformatics)https://github.com/Lujun995/DiSC_Replication_Code.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SingleCellStat", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-singlecellstat

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SingleCellStat

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SingleCellStat

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

2NOTE11OK

Check messages

NOTEdependencies in R coder-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Namespace in Imports field not imported from:
  ‘vegan’
All declared Imports should be used.

CRAN check page ↗

Slowest check: 2.8 min · r-oldrel-windows-x86_64

Status changes

NOTE11 OK, 2 NOTENow
NOTE12 OK, 2 NOTE2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.3.1

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 2
Examples that run: 100%2 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 50%

How these are measured

Downloads

2K

CRAN downloads in the past year

Rank #24,003 · ~6/day · ~168/mo

Releases R versions

Daily download trend is not available in this view yet.

19030 days

53290 days

2K1 year

Compare downloads with other packages →

Also on85 r2u3 autocran

How downloads are counted

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Installing SingleCellStat adds 3 packages (2 with compiled code, 1.7 MB of source tarballs). Heaviest: vegan 1.4 MB, matrixStats 207 KB, permute 118 KB.

Depends (1)

R >= 4.3.0

Imports (5)

matrixStatsMatrixstatsutilsvegan

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Jun Chen

Author, Maintainer since 0.3.1 (2025)

Lujun Zhang

Author

Releases (1)

R
R 4.6.0 released · 2026-04-24
0.3.1Latest
record
2025-05-13 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-05-13
Total releases: 1 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.3.0
Bundled data: 2.4 MB / 1 file
Download size: 2.5 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SingleCellStat")

Format

Chen, J., & Zhang, L. (2025). SingleCellStat: A Toolkit for Statistical Analysis of Single-Cell Omics Data (Version 0.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.SingleCellStat

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SingleCellStat version 0.3.1 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →