R Observatory: Metrics for SigBridgeRUtils version 0.2.7

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

SigBridgeRUtils

0.2.7Package record

Some Utilities & Base Supports for 'SigBridgeR'

0packages depend

3.4Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Yuxi YangCRAN page ↗GitHub ↗Issues ↗

Provides fundamental function support for 'SigBridgeR' and its single-cell phenotypic screening algorithm, including optional functions.

Changes in 0.2.7

Added C++-backed unpacking assignment with %<-%, including named extraction, recursive targets, positional collectors, and ignored elements.
Added unit and benchmark coverage for unpacking assignment, with zeallot as an optional comparison dependency.
Updated package build exclusions, formatting configuration, and README badges.
Added a NEWS.md file to track changes to the package.
beachmat backend for matrix stats

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SigBridgeRUtils", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("WangLabCSU/SigBridgeRUtils")

Development version from WangLabCSU/SigBridgeRUtils. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-sigbridgerutils

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SigBridgeRUtils

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SigBridgeRUtils

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.8 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK7 OK2026-03-14

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.7

READMEYes · 51 wordsVignettesNoNEWSYes · 67% structured · mentions 0.2.7Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 24 (1 internal)includes a package overview page
Examples that run: 25%5 run in a plain check · 15 never run
Exported functions with examples: 86%
Documented parameters: 87%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

3.4K

CRAN downloads in the past year

Rank #6,354 · ~9/day · ~287/mo

Releases R versions

Daily download trend is not available in this view yet.

77630 days

1.3K90 days

3.4K1 year

Compare downloads with other packages →

Also on49 r2u4 autocran

How downloads are counted

Repository

wanglabcsu/sigbridgerutils ↗Organization: WangLabCSU

0Stars

0Forks

0Open issues

0Open PRs

2Releases

48Commits

1Commit identities

License file reads as GPL-3.0 · 48 commits · Last activity 2026-09-29

Responsiveness

How these are sampled

PRs merged (all time): 100%
Median days to close, 50 most recently updated closed issues: not measured
Median days to close, 50 most recently updated closed PRs: 0

Releases over time

2026-09-29 · 12026-09-30 · 2

How these are measured

PracticesBeta

7 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/wanglabcsu/sigbridgerutils on 2026-10-18.

Continuous integration (2)

GitHub ActionsR CMD check workflow

The R CMD check workflow runs on Linux, macOS and Windows, and on R-devel

Docs source (1)

README.Rmd

CRAN release process (1)

cran-comments.md

Lint, format, editor (3)

AirVS CodeRStudio project

How this is detected·Detection ruleset v3 (2026-09-26)

AI coding toolsBeta

This repository shows signs of AI coding tools.

Posit Assistantfirst seen 2026-09-22
Seen in the repository: .posit/assistant

Shared conventions any agent may read, so they name no particular tool.

Seen in the repository: AGENTS.md

How this is detected·Detection ruleset v4 (updated 2026-09-27)

Dependencies

Declared dependencies

25 external dependencies (excludes base and recommended)

Installing SigBridgeRUtils adds 22 packages (16 with compiled code, 16 MB of source tarballs). Heaviest: data.table 5.7 MB, Rcpp 1.8 MB, reticulate 1.6 MB. 2 more not on CRAN are not measured.

Depends (1)

R >= 4.1.0

Imports (9)

beachmat chk cli data.table processx purrr Rcpp reticulate rlang

LinkingTo (4)

Rcpp RcppArmadillo assorthead beachmat

Suggests (14)

DelayedArray furrr future ggplot2MASSMatrixmatrixStats microbenchmark preprocessCore Rfast SeuratObject sparseMatrixStats testthat zeallot

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Yuxi Yang

Maintainer since 0.2.6 (2026), Author

Releases (2)

Pick two releases to compare their code metrics.

0.2.7Latest
record
2026-09-29 · current release · diff ↗ ·
removed 1 export
%||%

added 3 exports
%<-%, detect_gpu, ginv2_default
R
R 4.6.0 released · 2026-04-24
0.2.6
record
2026-03-12
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-03-12
Total releases: 2 / 1 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 4.1.0
Download size: 1.2 MB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SigBridgeRUtils")

Format

Yang, Y. (2026). SigBridgeRUtils: Some Utilities & Base Supports for 'SigBridgeR' (Version 0.2.7) [Computer software]. https://doi.org/10.32614/CRAN.package.SigBridgeRUtils

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SigBridgeRUtils version 0.2.7 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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