R Observatory: Metrics for ShortRead version 1.69.3-2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2026-04-17. Its history is shown below.

Reason: no longer on CRAN

ShortRead

1.69.3-2Package record

4packages dependsuggested by 3

–downloads / year

–test coverage

–flavors OK

Overview

About

CRAN page ↗

Install

BioconductorR (source archive)

BiocManager::install("ShortRead")

Installs the current Bioconductor release. Requires the BiocManager package.

url <- "https://cran.r-project.org/src/contrib/Archive/ShortRead/ShortRead_1.69.3-2.tar.gz"
pkgFile <- "ShortRead_1.69.3-2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.69.3-2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Status changes

WARNING2 WARNING2026-04-16

Advisories

none known

How this is measured·How advisories are found

Documentation

Documentation signals are not tracked yet for this package.

Websitenot tracked

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on3.2K r2u85.5K bioconda114 c2d4u

How downloads are counted

Dependencies

Declared dependencies

0 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

4direct

–indirect (not tracked)

Imports 4

Suggested by 3

Depends, Imports or LinkingTo, most downloaded first

genBaRcode DBTC QsRutils tidyGenR

Suggests, most downloaded first

vectra demulticoder inDAGO

How these are counted

Code & Tests

People & History

People (0)

Author records are not tracked yet for this package.

Releases (1)

R
R 4.6.0 released · 2026-04-24
1.69.3-2
record
2026-03-08
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-03-08
Total releases: 1 / 1 yrs

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ShortRead")

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ShortRead version 1.69.3-2 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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