SelfControlledCaseSeries
Self-Controlled Case Series
v6.1.4
·
Mar 26, 2026
·
Apache License 2.0
Description
Execute the self-controlled case series (SCCS) design using observational data in the OMOP Common Data Model. Extracts all necessary data from the database and transforms it to the format required for SCCS. Age and season can be modeled using splines assuming constant hazard within calendar months. Event-dependent censoring of the observation period can be corrected for. Many exposures can be included at once (MSCCS), with regularization on all coefficients except for the exposure of interest. Includes diagnostics for all major assumptions of the SCCS.
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CRAN Check Status
1
ERROR
6
NOTE
7
OK
Show all 14 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-macos-arm64 | OK |
| r-devel-windows-x86_64 | NOTE |
| r-oldrel-macos-arm64 | NOTE |
| r-oldrel-macos-x86_64 | NOTE |
| r-oldrel-windows-x86_64 | ERROR |
| r-patched-linux-x86_64 | NOTE |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (7 non-OK)
NOTE
r-devel-linux-x86_64-debian-clang
compiled code
File ‘SelfControlledCaseSeries/libs/SelfControlledCaseSeries.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
NOTE
r-devel-linux-x86_64-debian-gcc
compiled code
File ‘SelfControlledCaseSeries/libs/SelfControlledCaseSeries.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
NOTE
r-devel-windows-x86_64
compiled code
File 'SelfControlledCaseSeries/libs/x64/SelfControlledCaseSeries.dll': Found non-API call to R: 'R_UnboundValue' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual, and section 'Moving into C API compliance' for issues with the use of non-API entry points.
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.0Mb
sub-directories of 1Mb or more:
libs 3.9Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 5.9Mb
sub-directories of 1Mb or more:
libs 3.8Mb
ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'MultipleAnalyses.Rmd' using rmarkdown --- finished re-building 'MultipleAnalyses.Rmd' --- re-building 'ResultsSchema.Rmd' using rmarkdown --- finished re-building 'ResultsSchema.Rmd' --- re-building 'SingleStudies.Rmd' using rmarkdown ! Package pdftex.def Error: File `47fa7a5fa41c18374d3ccbd84c92e3e23a41305d.png' not found: using draft setting. Error: processing vignette 'SingleStudies.Rmd' failed with diagnostics: LaTeX failed to compile D:/RCompile/CRANpkg/local/4.4/SelfControlledCaseSeries.Rcheck/vign_test/SelfControlledCaseSeries/vignettes/SingleStudies.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See SingleStudies.log for more info. --- failed re-building 'SingleStudies.Rmd' SUMMARY: processing the following file failed: 'SingleStudies.Rmd' Error: Vignette re-building failed. Execution halted
NOTE
r-patched-linux-x86_64
compiled code
File ‘SelfControlledCaseSeries/libs/SelfControlledCaseSeries.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
Check History
ERROR 10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE Mar 27, 2026
NOTE
r-devel-linux-x86_64-debian-gcc
compiled code
File ‘SelfControlledCaseSeries/libs/SelfControlledCaseSeries.so’: Found non-API call to R: ‘R_UnboundValue’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.0Mb
sub-directories of 1Mb or more:
libs 3.9Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 5.9Mb
sub-directories of 1Mb or more:
libs 3.8Mb
ERROR
r-oldrel-windows-x86_64
re-building of vignette outputs
Error(s) in re-building vignettes: --- re-building 'MultipleAnalyses.Rmd' using rmarkdown --- finished re-building 'MultipleAnalyses.Rmd' --- re-building 'ResultsSchema.Rmd' using rmarkdown --- finished re-building 'ResultsSchema.Rmd' --- re-buildi ...[truncated]... i.org/tinytex/r/#debugging for debugging tips. See SingleStudies.log for more info. --- failed re-building 'SingleStudies.Rmd' SUMMARY: processing the following file failed: 'SingleStudies.Rmd' Error: Vignette re-building failed. Execution halted
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE
r-oldrel-macos-arm64
installed package size
installed size is 6.0Mb
sub-directories of 1Mb or more:
libs 3.9Mb
NOTE
r-oldrel-macos-x86_64
installed package size
installed size is 5.9Mb
sub-directories of 1Mb or more:
libs 3.8Mb