R Observatory: Metrics for SangerTools version 1.0.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

SangerTools

1.0.2Package record

Tools for Population Health Management Analytics

0packages depend

2.8Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Asif LaldinCRAN page ↗

Created for population health analytics and monitoring. The functions in this package work best when working with patient level Master Patient Index-like datasets . Built to be used by NHS bodies and other health service providers.

Changes in 1.0.2

Added df_to_sql
Added scale_fill_sanger
Added split_and_save
Added uk_pop_standard

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SangerTools", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-sangertools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SangerTools

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SangerTools

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 2.4 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.2

READMENoVignettesYes · 1 · dynamicNEWSYes · 67% structured · mentions 1.0.2Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 19 (1 internal)
Examples that run: 71%10 run in a plain check · 4 never run
Exported functions with examples: 81%
Documented parameters: 98%
Return-value docs: 100%
Help pages citing references: 0%

Vignettes (1)

SangerTools Vignette HTML

How these are measured

Downloads

2.8K

CRAN downloads in the past year

Rank #19,447 · ~8/day · ~232/mo

Releases R versions

Daily download trend is not available in this view yet.

25730 days

67090 days

2.8K1 year

Compare downloads with other packages →

Also on69 r2u8 autocran

How downloads are counted

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Installing SangerTools adds 61 packages (32 with compiled code, 42 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, ggthemes 2.1 MB.

Depends (1)

R >= 2.10

Imports (14)

ggplot2 dplyr scales janitor readrutilsggthemes magrittr readxl ggtext DBI odbc rlang tibble

LinkingTo (0)

none

Suggests (4)

knitr rmarkdown testthat kableExtra

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Asif Laldin

Author, Maintainer since 1.0.1 (2022)

Gary Hutson

Author

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.0.2Latest
record
2022-02-20 · current release · diff ↗ ·
removed 1 export
crude_pr

added 7 exports
age_bandizer, age_bandizer_2, cohort_processing, crude_rates, scale_fill_sanger, split_and_save, standardised_rates_df
1.0.1
record
2022-01-06
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-01-06
Total releases: 2 / 4 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 2.10
Bundled data: 35 KB / 3 files
Download size: 277 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SangerTools")

Format

Laldin, A., & Hutson, G. (2022). SangerTools: Tools for Population Health Management Analytics (Version 1.0.2) [Computer software]. https://doi.org/10.32614/CRAN.package.SangerTools

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SangerTools version 1.0.2 [Data set]. HJJB, LLC. Data release v2026-10-19. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-19, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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