This package was removed from CRAN on 2014-10-31. Its history is shown below.

Reason: never updated despite multiple reminders

Details below reflect version 1.2.1, its last release before removal.

STARSEQ

1.2.1

Secondary Trait Association analysis for Rare variants via SEQuence data

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Dajiang Liu2 releasesCRAN page ↗

STARSEQ is an R-package for detecting associations with rare variants using selected samples in sequence-based association studies. It corrects for the bias in the secondary trait distribution induced by selective sampling on the primary trait. The corrected secondary trait can be analyzed by standard rare variant tests. In the STARSEQ package, several popular rare variant tests were implemented, which include 1.) combined multivariate and collapsing 2.) weighted sum statistics, 3.) kernel based adaptive cluster, 4.) variable threshold test 5.) sequence kernel association test.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/STARSEQ/STARSEQ_1.2.1.tar.gz"
pkgFile <- "STARSEQ_1.2.1.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.2.1) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 5%

Downloads

STARSEQ Releases R versions

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Dependencies

Declared dependencies

3 external dependencies (excludes base and recommended)

Depends (3)

CompQuadForm numDeriv seqminer

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Code Composition

C++ 1,197 (43%)Rd 804 (29%)R 774 (28%)

Code characteristics

Cyclomatic complexity: 3.0 median / 9 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

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Functions

53 0 exported

Complexity

3.9 avg / 9 max

Call network

53 nodes / 44 edges

Test coverage has not been measured for this package yet; nodes fall back to a neutral fill.

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Other (1)

Dajiang Liu

Contributor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 3.2.0 released · 2015-04-16
archivedRemoved from CRAN
2014-10-31
never updated despite multiple reminders
R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
1.2.1
2012-05-15 · diff ↗
1.02
2012-05-15
R
R 2.15.0 released · 2012-03-30

Package metadata

Total releases: 2
License: GPL-3 OSI
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

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