R Observatory: Metrics for SPMS version 2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2015-07-01. Its history is shown below.

Reason: maintainer address <ni380910405@yahoo.cn> bounced

Details below reflect version 2.0, its last release before removal.

SPMS

2.0

Sub-Pathway Mining Software

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Xiaomeng Ni2 releasesCRAN page ↗

Use new methods to mine sub-pathway,but user need to prepare for xml format data of KEGG PATHWAY and store them in "xml" folder under "paths"(paths library is the default directory which is set by user) library,prepare KEGG pathway map data and store them in "png" folder under the "paths"(paths library is the default directory which is set by user) library in advance.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/SPMS/SPMS_2.0.tar.gz"
pkgFile <- "SPMS_2.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (2.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

1

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: not tracked
Return-value docs: not tracked
References docs: 91%

Downloads

SPMS Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (1)

Matrix

LinkingTo (0)

none

Suggests (8)

base RBGL XMLgraphicspng graph EBImage igraph

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Other (1)

Xiaomeng Ni

Contributor

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 3.3.0 released · 2016-05-03
archivedRemoved from CRAN
2015-07-01
maintainer address <ni380910405@yahoo.cn> bounced
R
R 3.2.0 released · 2015-04-16
R
R 3.1.0 released · 2014-04-10
2.0
2013-05-08 · diff ↗
1.0
2013-05-08
R
R 3.0.0 released · 2013-04-03

Package metadata

Total releases: 2
License: GPL-2 OSI
Bundled data: 6.5 KB / 2 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SPMS")

Format

Ni, X. (n.d.). SPMS: Sub-Pathway Mining Software (Version 2.0) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=SPMS

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SPMS version 2.0 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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