R Observatory: Metrics for SNPknock version 0.8.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2025-12-25. Its history is shown below.

Reason: issues were not addressed in time

Details below reflect version 0.8.2, its last release before removal.

SNPknock

0.8.2Package record

Knockoffs for Hidden Markov Models and Genetic Data

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Matteo SesiaCRAN page ↗Website ↗

Generate knockoffs for genetic data and hidden Markov models. For more information, see the website below and the accompanying papers: "Gene hunting with hidden Markov model knockoffs", Sesia et al., Biometrika, 2019, (doi:10.1093/biomet/asy033). "Multi-resolution localization of causal variants across the genome", Sesia et al., bioRxiv, 2019, (doi:10.1101/631390).

Changes in 0.8.2

Included support for group knockoffs.

Renamed functions in a more intuitive way.

Improved documentation.

From NEWS in the release

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/SNPknock/SNPknock_0.8.2.tar.gz"
pkgFile <- "SNPknock_0.8.2.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.8.2) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.8.2

READMEYes · 34 wordsVignettesYes · 2 · dynamicNEWSYes · 0% structured · mentions 0.8.2Citation fileYes · cites a publicationWebsiteYes

Help pages: 21 (12 internal)
Examples that run: 100%9 run in a plain check
Exported functions with examples: 100%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 43% with a bibliography file

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on339 r2u10 autocran

How downloads are counted

Dependencies

Declared dependencies

8 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.3.0

Imports (2)

Rcpp Rdpack

LinkingTo (3)

Rcpp RcppArmadillo RcppProgress

Suggests (4)

knitr testthatparalleldoParallel

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Matteo Sesia

Author, Maintainer since 0.5 (2017)

Releases (5)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-12-25
issues were not addressed in time
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.8.2
record
2019-05-17 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.7.1
record
2018-05-30 · diff ↗
0.7.0
record
2018-05-25 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.5.1
record
2018-01-09 · diff ↗
0.5
record
2017-10-10
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-10-10
Total releases: 5 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.3.0

Cite

Cite this package

Run in R for the authors' entry:

citation("SNPknock")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1093/biomet/asy033.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SNPknock version 0.8.2 [Data set]. HJJB, LLC. Data release v2026-10-24. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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