R Observatory: Metrics for SMITIDvisu version 0.0.9

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2025-12-25. Its history is shown below.

Reason: issues were not addressed in time

Details below reflect version 0.0.9, its last release before removal.

SMITIDvisu

0.0.9

Visualize Data for Host and Viral Population from 'SMITIDstruct' using 'HTMLwidgets'

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Jean-Francois Rey5 releasesCRAN page ↗

Visualisation tools for 'SMITIDstruct' package. Allow to visualize host timeline, transmission tree, index diversities and variant graph using 'HTMLwidgets'. It mainly using 'D3JS' javascript framework.

Install

R (source archive)Ubuntu (r2u)openSUSE (OBS)

url <- "https://cran.r-project.org/src/contrib/Archive/SMITIDvisu/SMITIDvisu_0.0.9.tar.gz"
pkgFile <- "SMITIDvisu_0.0.9.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.0.9) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-smitidvisu

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SMITIDvisu

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

Yes

Tests · ratio 0.58

not tracked

Coverage

100%

Documentation · exports

6

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 63%
Documented parameters: 100%
Return-value docs: 13%
References docs: 0%

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on359 r2u17 autocran

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.5.0utils

Imports (5)

Rcpp htmlwidgets yaml jsonlite magrittr

LinkingTo (1)

Rcpp

Suggests (4)

SMITIDstruct knitr shiny testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Jean-Francois Rey

Author, Maintainer

Authors (1)

Jean-Francois Rey

Author, Maintainer

Contributors (1)

Julien Boge

Contributor · added in 0.0.6

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
archivedRemoved from CRAN
2025-12-25
issues were not addressed in time
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.0.9
2021-02-08 · diff ↗
0.0.8
2020-11-05 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.0.6
2019-06-14 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.0.4
2019-03-05 · diff ↗
0.0.3
2019-02-18
R
R 3.5.0 released · 2018-04-23

Package metadata

Total releases: 5
License: GPL (>= 3) | file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 4.2 KB / 3 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SMITIDvisu")

Format

Rey, J., & Boge, J. (n.d.). SMITIDvisu: Visualize Data for Host and Viral Population from 'SMITIDstruct' using 'HTMLwidgets' (Version 0.0.9) [Computer software]. Retrieved August 14, 2026, from https://CRAN.R-project.org/package=SMITIDvisu

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SMITIDvisu version 0.0.9 [Data set]. HJJB, LLC. Data release v2026-08-13. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-13, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →