R Observatory: Metrics for SLICER version 0.2.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2022-06-28. Its history is shown below.

Reason: check problems were not corrected in time. Also has ACM licence with no ACM code, not does anything it depends on (any more)

Details below reflect version 0.2.0, its last release before removal.

SLICER

0.2.0Package record

Selective Locally Linear Inference of Cellular Expression Relationships

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Joshua WelchCRAN page ↗

Provides an implementation of SLICER, an algorithm for inferring cellular trajectories from single cell RNA sequencing data. See Welch, JD, Hartemink AJ, Prins JF (2016) doi:10.1186/s13059-016-0975-3.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/SLICER/SLICER_0.2.0.tar.gz"
pkgFile <- "SLICER_0.2.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.2.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.0

READMEYes · 376 wordsVignettesYes · 1 · staticNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 13
Examples that run: 50%5 run in a plain check · 5 never run
Exported functions with examples: 83%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on43 r2u4 autocran

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (6)

alphahull igraph llegrDevicesgraphicsstats

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Joshua Welch

Contributor

Maintainer since 0.2.0 (2017)

Releases (1)

R
R 4.3.0 released · 2023-04-21
archivedRemoved from CRAN
2022-06-28
check problems were not corrected in time Also has ACM licence with no ACM code, not does anything it depends on (any more)
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
0.2.0
record
2017-08-22
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-08-22
Total releases: 1 / 9 yrs
License: ACM
Minimum R: ≥ 2.10
Bundled data: 1.1 MB / 2 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SLICER")

Format

Welch, J. (n.d.). SLICER: Selective Locally Linear Inference of Cellular Expression Relationships (Version 0.2.0) [Computer software]. Retrieved October 27, 2026, from https://CRAN.R-project.org/package=SLICER

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SLICER version 0.2.0 [Data set]. HJJB, LLC. Data release v2026-10-26. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-26, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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