R Observatory: Metrics for SEERaBomb version 2019.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

SEERaBomb

2019.2Package record

SEER and Atomic Bomb Survivor Data Analysis Tools

0packages depend

3.3Kdownloads / year

–test coverage

8/13flavors OK

Overview

About

Maintained by Tomas RadivoyevitchCRAN page ↗Website ↗

Creates SEER (Surveillance, Epidemiology and End Results) and A-bomb data binaries from ASCII sources and provides tools for estimating SEER second cancer risks. Methods are described in doi:10.1038/leu.2015.258.

Changes in 2019.2

small bug fixes since 2019.1 version.

From NEWS in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("SEERaBomb", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-seerabomb

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-SEERaBomb

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-SEERaBomb

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

5NOTE8OK

Check messages

NOTER code for possible problemsr-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

Found calls to structure() using deprecated special names:
  SEERaBomb/man/fillPYM.Rd (.Dim: 1, .Dimnames: 1)
'.Dim' should be changed to 'dim'.
'.Dimnames' should be changed to 'dimnames'.

CRAN check page ↗

Slowest check: 5.6 min · r-oldrel-windows-x86_64

Status changes

NOTE8 OK, 5 NOTE2026-09-08
ERROR8 OK, 4 NOTE, 1 ERROR2026-09-07
NOTE11 OK, 2 NOTE2026-07-16
OK13 OK2026-06-09
ERROR12 OK, 1 ERROR2026-06-08

Show 7 earlier changesHide 7 earlier changes

OK13 OK2026-05-02
ERROR11 OK, 1 ERROR2026-04-25
OK14 OK2026-04-22
ERROR13 OK, 1 ERROR2026-04-18
OK14 OK2026-04-10
ERROR13 OK, 1 ERROR2026-04-09
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2019.2

READMENoVignettesNoNEWSYes · 0% structured · mentions 2019.2Citation fileNoWebsiteYes

Help pages: 46 (13 internal)includes a package overview page
Examples that run: 29%11 run in a plain check · 26 never run · 1 hold no code
Exported functions with examples: 86%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 15%

How these are measured

Downloads

3.3K

CRAN downloads in the past year

Rank #10,858 · ~9/day · ~276/mo

Releases R versions

Daily download trend is not available in this view yet.

37330 days

96690 days

3.3K1 year

Compare downloads with other packages →

Also on344 r2u

How downloads are counted

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Installing SEERaBomb adds 163 packages (94 with compiled code, 118 MB of source tarballs). Heaviest: stringi 11 MB, ggplot2 6.0 MB, data.table 5.7 MB.

Depends (4)

dplyr ggplot2 rgl demography

Imports (18)

Rcpp reshape2mgcvtibble LaF DBI RSQLite openxlsx WriteXLS labelled scales forcats purrr readr tidyr stringr plyrsurvival

LinkingTo (1)

Rcpp

Suggests (1)

bbmle

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (2)

Tomas Radivoyevitch

Author, Maintainer since 0.01.1 (2012)

R. Molenaar

Contributor · added in 2019.1

Releases (15)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
2019.2Latest
record
2019-12-12 · current release · diff ↗
2019.1
record
2019-05-07 · diff ↗
R
R 3.6.0 released · 2019-04-26
2018.1
record
2018-05-11 · diff ↗
R
R 3.5.0 released · 2018-04-23
2017.2
record
2017-08-14 · diff ↗
2017.1
record
2017-04-26 · diff ↗
R
R 3.4.0 released · 2017-04-21
2016.2
record
2016-11-11 · diff ↗

Show 14 earlier eventsHide 14 earlier events

R
R 3.3.0 released · 2016-05-03
2016.1
record
2016-04-25 · diff ↗
2015.2
record
2015-09-07 · diff ↗
2015.1
record
2015-05-05 · diff ↗ ·
removed 5 exports
mkSEER, getFields, pickFields, mkAbomb, mkHema87

added 1 export
pattern:^[[:alpha:]]+
R
R 3.2.0 released · 2015-04-16
2014.4.1
record
2014-04-18 · diff ↗
R
R 3.1.0 released · 2014-04-10
2013.4.3
record
2013-12-12 · diff ↗ ·
removed 4 exports
blood2012fig4, blood2012fig5a, blood2012fig5bc, blood2012fig6

added 2 exports
mkAbomb, mkHema87
2013.4.1
record
2013-04-27 · diff ↗
2013.4.0
record
2013-04-26 · diff ↗
R
R 3.0.0 released · 2013-04-03
0.2.1
record
2012-06-26 · diff ↗
0.01.1
record
2012-06-17
R
R 2.15.0 released · 2012-03-30

Package metadata

First published: 2012-06-17
Total releases: 15 / 14 yrs
License: GPL (>= 2) OSI
Bundled data: 12 KB / 4 files
Download size: 544 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("SEERaBomb")

Format

Radivoyevitch, T., & Molenaar, R. (2019). SEERaBomb: SEER and Atomic Bomb Survivor Data Analysis Tools (Version 2019.2) [Computer software]. https://doi.org/10.32614/CRAN.package.SEERaBomb

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for SEERaBomb version 2019.2 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

Report a problem with this page →