R Observatory: Metrics for Racmacs version 1.2.10

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

Racmacs

1.2.10

Antigenic Cartography Macros

1packages depend

7.3Kdownloads / year

74.1%test coverage

13/13checks pass

Overview

About

Maintained by Sam WilksFirst published 2023-09-044 releasesCRAN page ↗GitHub ↗

A toolkit for making antigenic maps from immunological assay data, in order to quantify and visualize antigenic differences between different pathogen strains as described in Smith et al. (2004) doi:10.1126/science.1097211 and used in the World Health Organization influenza vaccine strain selection process. Additional functions allow for the diagnostic evaluation of antigenic maps and an interactive viewer is provided to explore antigenic relationships amongst several strains and incorporate the visualization of associated genetic information.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("Racmacs", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("acorg/Racmacs")

Development version from acorg/Racmacs. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-racmacs

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-Racmacs

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-Racmacs

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 22.0 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.42

74.1%

Coverage · measured lines

100%

Documentation · exports

18

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 3 earlier snapshots

NOTE2026-04-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-09
10 OK · 3 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 636 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: not tracked
Documented parameters: 99%
Return-value docs: 100%
References docs: 0%

Downloads

7.3K

CRAN downloads in the past year

Rank #7,558 · ~20/day · ~609/mo

Releases R versions

Daily download trend is not available in this view yet.

33030 days

1.2K90 days

7.3K1 year

Compare downloads with other packages →

Also on388 r2u28 autocran

Repository

GitHub ↗ acorg/racmacs

24Stars

11Forks

36Open issues

1Open PRs

6Releases

1,224Commits

7Contributors

License AGPL-3.0 · 1,224 commits · Last activity 2026-07-08 · 0% stars, 30d

Stars over time

2025-08-09 · 232026-07-07 · 24

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/acorg/racmacs on 2026-08-23.

Continuous integration (1)

GitHub Actions

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (2)

lintrRStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

37 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.0

Imports (18)

Rcpp jsonlite ks brotli shiny shinyFiles shinyjs htmlwidgets ggplot2 htmltools rmarchingcubes shapeMASSmagrittr igraph dplyr vctrs rlang

LinkingTo (5)

Rcpp RcppArmadillo RcppProgress RcppEnsmallen rapidjsonr

Suggests (15)

testthat r3js knitr rmarkdown rstudioapi plotly geometry readxl stringr tibble tidyr base64enc lifecycle MCMCpack spelling

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

topolow

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Sam Wilks

Author, Maintainer

Authors (1)

Sam Wilks

Author, Maintainer

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

1.2.10Latest
2026-07-08 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.2.9
2023-11-30 · diff ↗
1.2.8
2023-11-23 · diff ↗
unarchivedReturned to CRAN
2023-11-23
archivedRemoved from CRAN
2023-11-01
check problems were not corrected in time
1.2.7
2023-09-04
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-09-04
Total releases: 4 / 3 yrs
License: AGPL-3 OSI
Minimum R: ≥ 4.0
Download size: 2.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("Racmacs")

Format

Wilks, S. (2026). Racmacs: Antigenic Cartography Macros (Version 1.2.10) [Computer software]. https://doi.org/10.32614/CRAN.package.Racmacs

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for Racmacs version 1.2.10 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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