R Observatory: Metrics for RNAsmc version 0.8.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2024-05-14. Its history is shown below.

Reason: requires archived package 'RRNA'

Details below reflect version 0.8.0, its last release before removal.

RNAsmc

0.8.0Package record

RNA Secondary Structure Module Mining, Comparison and Plotting

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Zheng HeWeiCRAN page ↗

Provides function for RNA secondary structure plotting, comparison and module mining. Given a RNA secondary structure, you can obtain stem regions, hairpin loops, internal loops, bulge loops and multibranch loops of this RNA structure using this program. They are the basic modules of RNA secondary structure. For each module you get, you can use this program to label the RNA structure with a specific color. You can also use this program to compare two RNA secondary structures to get a score that represents similarity. Reference: Reuter JS, Mathews DH (2010) doi:10.1186/1471-2105-11-129.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/RNAsmc/RNAsmc_0.8.0.tar.gz"
pkgFile <- "RNAsmc_0.8.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (0.8.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.8.0

READMENoVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 28
Examples that run: 96%27 run in a plain check · 1 hold no code
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 0%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on51 r2u2 autocran39 c2d4u

How downloads are counted

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (4)

RRNAstatsgraphicscirclize

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Zheng HeWei

Contributor

Maintainer since 0.1.0 (2017)

Releases (8)

Pick two releases to compare their code metrics.

R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2024-05-14
requires archived package 'RRNA'
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.8.0
record
2023-01-12 · diff ↗
R
R 4.2.0 released · 2022-04-22
unarchivedReturned to CRAN
2021-12-14
0.7.0
record
2021-12-14 · diff ↗
archivedRemoved from CRAN
2021-10-08
the request of the maintainer
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.6.0
record
2020-03-28 · diff ↗
0.5.0
record
2020-03-24 · diff ↗ ·
added 18 exports
bulge_loop, bulgeLoopsPlot, ct2dot, external_loop, externalLoopsPlot, hairpin_loop, hairpinLoopsPlot, internal_loop, internalLoopsPlot, multi_branch_loop, multiBranchLoopsPlot, RNAcirPlot, RNAstrCluster, RNAstrPlot, stem, stemPlot, strCompare, strComparePlot
R
R 3.6.0 released · 2019-04-26
0.4.0
record
2018-12-11 · diff ↗
R
R 3.5.0 released · 2018-04-23

Show 4 earlier eventsHide 4 earlier events

0.3.0
record
2018-03-19 · diff ↗
0.2.0
record
2018-03-12 · diff ↗
0.1.0
record
2017-08-23
R
R 3.4.0 released · 2017-04-21

Package metadata

First published: 2017-08-23
Total releases: 8 / 9 yrs
License: GPL-2 OSI
Bundled data: 3.8 KB / 7 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("RNAsmc")

Format

HeWei, Z. (n.d.). RNAsmc: RNA Secondary Structure Module Mining, Comparison and Plotting (Version 0.8.0) [Computer software]. Retrieved October 26, 2026, from https://CRAN.R-project.org/package=RNAsmc

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for RNAsmc version 0.8.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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