QGglmm

0.8.0

Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models

0packages depend

3.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Pierre de VillemereuilFirst published 2016-07-139 releasesCRAN page ↗GitHub ↗

Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("QGglmm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("devillemereuil/qgglmm")

Development version from devillemereuil/qgglmm. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-qgglmm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-QGglmm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-QGglmm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 1.7 min · r-release-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 283 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 7%

Downloads

3.1K

CRAN downloads in the past year

Rank #14,253 · ~8/day · ~257/mo

Releases R versions

Daily download trend is not available in this view yet.

22230 days

77290 days

3.1K1 year

Compare downloads with other packages →

Also on89 r2u232 autocran40 c2d4u

Repository

GitHub ↗ devillemereuil/qgglmm

16Stars

3Forks

2Open issues

0Open PRs

9Releases

175Commits

7Contributors

175 commits · Last activity 2025-01-20

Stars over time

2025-03-14 · 162026-07-07 · 16

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/devillemereuil/qgglmm on 2026-07-19.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (0)

none

Imports (1)

cubature

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

Other 3,773 (46%)R 2,182 (26%)Vignettes 1,272 (15%)Rd 1,052 (13%)

Code characteristics

Cyclomatic complexity: 4.0 median / 32 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

30 14 exported

Complexity

8 avg / 32 max

Call network

30 nodes / 44 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (1)

Maintainer (1)

Pierre de Villemereuil

Author, Maintainer

Authors (1)

Pierre de Villemereuil

Author, Maintainer

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.8.0Latest
2025-01-20 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.7.4
2020-01-07 · diff ↗
0.7.3
2019-12-06 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.7.2
2018-11-12 · diff ↗
0.7.1
2018-06-15 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.6.0
2017-10-09 · diff ↗
R
R 3.4.0 released · 2017-04-21

Show 4 earlier events

0.5.1
2016-10-02 · diff ↗
0.5
2016-09-28 · diff ↗
0.4
2016-07-13
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-07-13
Total releases: 9 / 10 yrs
License: GPL-2 OSI
Download size: 453 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Mixed, Multilevel, and Hierarchical Models in R

Report a problem with this page →