R Observatory: Metrics for QGglmm version 0.8.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

QGglmm

0.8.0Package record

Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models

0packages depend

3.1Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Pierre de VillemereuilCRAN page ↗GitHub ↗Issues ↗

Compute various quantitative genetics parameters from a Generalised Linear Mixed Model (GLMM) estimates. Especially, it yields the observed phenotypic mean, phenotypic variance and additive genetic variance.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("QGglmm", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("devillemereuil/qgglmm")

Development version from devillemereuil/qgglmm. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-qgglmm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-QGglmm

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-QGglmm

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.8 min · r-devel-windows-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.8.0

READMEYes · 283 wordsVignettesYes · 1 · staticNEWSYes · 100% structured · does not mention 0.8.0Citation fileYes · cites a publicationWebsitenot declared in DESCRIPTION

Help pages: 15includes a package overview page
Examples that run: 100%14 run in a plain check
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 7%

Vignettes (1)

How to use QGglmm PDF

How these are measured

Downloads

3.1K

CRAN downloads in the past year

Rank #12,708 · ~8/day · ~256/mo

Releases R versions

Daily download trend is not available in this view yet.

31930 days

89290 days

3.1K1 year

Compare downloads with other packages →

Also on139 r2u215 autocran85 c2d4u

How downloads are counted

Repository

devillemereuil/qgglmm ↗Account: devillemereuil

16Stars

3Forks

2Open issues

0Open PRs

9Releases

175Commits

7Commit identities

175 commits · Last activity 2025-01-20 · 0% stars, 30d

Responsiveness

How these are sampled

PRs merged (all time): 89%
Median days to close, 50 most recently updated closed issues: 3
Median days to close, 50 most recently updated closed PRs: 0

Stars over time

2025-03-14 · 162026-07-07 · 16

How these are measured

PracticesBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/devillemereuil/qgglmm on 2026-10-21.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Installing QGglmm adds 2 packages (2 with compiled code, 5.0 MB of source tarballs). Heaviest: cubature 3.2 MB, Rcpp 1.8 MB.

Depends (0)

none

Imports (1)

cubature

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

People & History

People (1)

Pierre de Villemereuil

Author, Maintainer since 0.4 (2016)

Releases (9)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
0.8.0Latest
record
2025-01-20 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
0.7.4
record
2020-01-07 · diff ↗
0.7.3
record
2019-12-06 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.7.2
record
2018-11-12 · diff ↗
0.7.1
record
2018-06-15 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.6.0
record
2017-10-09 · diff ↗
R
R 3.4.0 released · 2017-04-21

Show 4 earlier eventsHide 4 earlier events

0.5.1
record
2016-10-02 · diff ↗
0.5
record
2016-09-28 · diff ↗ ·
added 2 exports
QGicc, QGmvicc
0.4
record
2016-07-13
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-07-13
Total releases: 9 / 10 yrs
License: GPL-2 OSI
Download size: 453 KB

Appears in task views

Mixed, Multilevel, and Hierarchical Models in R

Cite

Cite this package

Run in R for the authors' entry:

citation("QGglmm")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.1534/genetics.115.186536.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for QGglmm version 0.8.0 [Data set]. HJJB, LLC. Data release v2026-10-25. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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