R Observatory: Metrics for PulmoDataSets version 0.2.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

PulmoDataSets

0.2.1Package record

A Curated Collection of Pulmonary and Respiratory Disease Datasets

0packages depend

5.2Kdownloads / year

66.7%test coverage

13/13flavors OK

Overview

About

Maintained by Renzo Caceres RossiCRAN page ↗GitHub ↗Website ↗Issues ↗

Provides a comprehensive and curated collection of datasets related to the lungs, respiratory system, and associated diseases. This package includes epidemiological, clinical, experimental, and simulated datasets on conditions such as lung cancer, asthma, Chronic Obstructive Pulmonary Disease (COPD), tuberculosis, whooping cough, pneumonia, influenza, and other respiratory illnesses. It is designed to support data exploration, statistical modeling, teaching, and research in pulmonary medicine, public health, environmental epidemiology, and respiratory disease surveillance.

Changes in 0.2.1

Minor Changes

Updated inst/CITATION file to include the official CRAN DOI (10.32614/CRAN.package.PulmoDataSets) for proper citation support.

---

From NEWS.md in the release

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("PulmoDataSets", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("lightbluetitan/pulmodatasets")

Development version from lightbluetitan/pulmodatasets. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-pulmodatasets

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-PulmoDataSets

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-PulmoDataSets

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 1.6 min · r-release-macos-x86_64

Status changes

OK13 OK2026-09-08
ERROR12 OK, 1 ERROR2026-09-07
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.2.1

READMEYes · 138 wordsVignettesYes · 1 · dynamicNEWSYes · 100% structured · mentions 0.2.1Citation fileYes · software entry onlyWebsiteYes · pkgdown

Help pages: 38includes a package overview page
Examples that run: 100%1 run in a plain check (under a condition)
Exported functions with examples: 3%
Documented parameters: 0%
Return-value docs: 3%
Help pages citing references: 0%

Vignettes (1)

PulmoDataSets: A Curated Collection of Pulmonary and Respiratory Disease Datasets HTML

How these are measured

Downloads

5.2K

CRAN downloads in the past year

Rank #14,715 · ~14/day · ~435/mo

Releases R versions

Daily download trend is not available in this view yet.

28830 days

81590 days

5.2K1 year

Compare downloads with other packages →

Also on87 r2u2 autocran

How downloads are counted

Repository

lightbluetitan/pulmodatasets ↗Account: lightbluetitan

2Stars

0Forks

0Open issues

0Open PRs

0Releases

4Commits

1Commit identities

4 commits · Last activity 2026-03-05 · 0% stars, 30d

Responsiveness

not measured

Stars over time

2025-12-27 · 12026-07-07 · 2

How these are measured

PracticesBeta

4 development-tooling and community-health practices detected across 3 families in the upstream repository

Checks run against github.com/lightbluetitan/pulmodatasets on 2026-10-22.

Docs source (2)

pkgdown

GitHub Pages site last deployed 2026-03-05

pkgdown site last built 2026-03-04, before release 0.2.1 (2026-03-05)

Research and citation (1)

JOSS paper

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v4 (2026-10-20)

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Installing PulmoDataSets adds no packages beyond those that come with R.

Depends (1)

R >= 4.1.0

Imports (1)

utils

LinkingTo (0)

none

Suggests (5)

ggplot2 dplyr testthat knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Renzo Caceres Rossi

Author, Maintainer since 0.1.0 (2025)

Releases (3)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.2.1Latest
record
2026-03-05 · current release · diff ↗
0.2.0
record
2025-09-07 · diff ↗ ·
removed 1 export
view_datasets_pulmo

added 1 export
view_datasets_PulmoDataSets
0.1.0
record
2025-06-03
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-06-03
Total releases: 3 / 1 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.0
Bundled data: 186 KB / 36 files
Download size: 383 KB

Cite

Cite this package

Run in R for the authors' entry:

citation("PulmoDataSets")

The package provides a citation file, so citation() returns the authors' own entry.

It points to 10.32614/cran.package.pulmodatasets.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for PulmoDataSets version 0.2.1 [Data set]. HJJB, LLC. Data release v2026-10-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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