R Observatory: Metrics for ProbeDeveloper version 1.1.2

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

ProbeDeveloper

1.1.2

Develop Hybridization Probes

0packages depend

2.4Kdownloads / year

–test coverage

9/13checks pass

Overview

About

Maintained by Junhui LiFirst published 2019-12-184 releasesCRAN page ↗

Hybridization probes for target sequences can be made based on melting temperature value calculated by R package 'TmCalculator' https://CRAN.R-project.org/package=TmCalculator and methods extended from Beliveau, B. J.,(2018) doi:10.1073/pnas.1714530115, and those hybridization probes can be used to capture specific target regions in fluorescence in situ hybridization and next generation sequence experiments.

Install

R (CRAN)Ubuntu (r2u)

install.packages("ProbeDeveloper", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-probedeveloper

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

4ERROR9OK

Failing flavors

ERROR r-oldrel-macos-arm64
ERROR r-oldrel-macos-x86_64
ERROR r-release-macos-arm64
ERROR r-release-macos-x86_64

Slowest check: 6.5 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

2

Dependencies · direct

Check history

ERROR2026-03-21
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 2 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 50%
Documented parameters: 90%
Return-value docs: 100%
References docs: 50%

Downloads

2.4K

CRAN downloads in the past year

Rank #19,782 · ~7/day · ~200/mo

Releases R versions

Daily download trend is not available in this view yet.

10330 days

56090 days

2.4K1 year

Compare downloads with other packages →

Also on112 r2u

Dependencies

Declared dependencies

2 external dependencies (excludes base and recommended)

Depends (1)

R >= 2.10

Imports (2)

TmCalculator Biostrings

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Junhui Li

Maintainer, Author

Authors (1)

Junhui Li

Maintainer, Author

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

1.1.2Latest
2026-06-13 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
1.1.1
2026-03-23 · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
1.1.0
2022-01-31 · diff ↗
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0.0
2019-12-18
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-12-18
Total releases: 4 / 7 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 2.10
Bundled data: 14 KB / 1 file
Download size: 24 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("ProbeDeveloper")

Format

Li, J. (2026). ProbeDeveloper: Develop Hybridization Probes (Version 1.1.2) [Computer software]. https://doi.org/10.32614/CRAN.package.ProbeDeveloper

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for ProbeDeveloper version 1.1.2 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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